Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003237-TA|BGIBMGA003237-PA|IPR000467|D111/G-patch
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 40 0.002
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 39 0.005
03_02_0392 - 8070342-8071628 38 0.011
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 37 0.020
01_05_0166 + 18844468-18845184,18847394-18847690 35 0.079
12_02_1111 - 26157796-26160330 32 0.56
01_05_0604 - 23583244-23584989 32 0.56
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 32 0.73
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 31 1.7
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 31 1.7
03_02_0761 - 10963045-10963482,10963713-10963889,10964151-109642... 30 3.0
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137... 29 3.9
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 29 3.9
07_01_1018 - 8664851-8665495,8665525-8665935,8666374-8666580 28 9.0
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 28 9.0
04_04_0489 + 25600543-25601368,25601441-25602282 28 9.0
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 28 9.0
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 8 LEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGHDPAAEF 49
L+K GW GKGLGK+E GI+E +K ++ + G+G +F
Sbjct: 69 LQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVGKQEQDDF 109
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 39.1 bits (87), Expect = 0.005
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 1 MDFARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
++ A+K +E GW +G+ LGK G+ E ++P + + G+G
Sbjct: 416 LNSAKKMMENMGWKEGEALGKSTKGMVEPIQPTVNKHGAGLG 457
>03_02_0392 - 8070342-8071628
Length = 428
Score = 37.9 bits (84), Expect = 0.011
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 3 FARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGHDPA 46
F L YGW++GKG+G++ G ++ ++ + G+G++P+
Sbjct: 185 FGAALLAGYGWSEGKGIGRNNKGDTKVVEYDRRAGTQGLGYNPS 228
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 4 ARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGHD 44
A + +++ GW +G+GLGK + GI ++ K K+ G+G D
Sbjct: 19 AFRLMKQMGWEEGEGLGKDKQGIKGHVRVKNKQDTLGVGVD 59
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 35.1 bits (77), Expect = 0.079
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1 MDFARKQLEKYGWTDGKGLGKHENGISEALKPK 33
M A++ + + GW +G+GLGK E GI+ L K
Sbjct: 168 MTAAQRMMARMGWKEGQGLGKQEQGITAPLVAK 200
>12_02_1111 - 26157796-26160330
Length = 844
Score = 32.3 bits (70), Expect = 0.56
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 KQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
K + G+ DG GLGK+E GI ++ L+ G+G
Sbjct: 188 KMMAMMGYKDGMGLGKNEQGIVAPVETTLRPKNAGLG 224
>01_05_0604 - 23583244-23584989
Length = 581
Score = 32.3 bits (70), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 8 LEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
+ + + +G GLGK+ +GI + +KP +K GIG
Sbjct: 105 MAQMNYEEGAGLGKYGHGIIDPIKPTIKYGKGGIG 139
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 31.9 bits (69), Expect = 0.73
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 3 FARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
F K + K G+ +G GLGK G+ + ++P + G+G
Sbjct: 613 FGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRPKSLGLG 652
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 2 DFARKQLEKYGWTDGKGLGKHENGISEALKP-KLKRSVTGIG 42
+ K L K GW +G+GLG +G ++ + +K+ G+G
Sbjct: 412 NIGHKLLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVG 453
>02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 8 LEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
L GW +G GLGK +GI E ++ K G+G
Sbjct: 969 LRNMGWQEGLGLGKTGSGIKEPVQAKSVDVRAGLG 1003
>03_02_0761 -
10963045-10963482,10963713-10963889,10964151-10964261,
10964982-10965227,10965571-10965630,10965729-10966034,
10966626-10966769,10966994-10967392
Length = 626
Score = 29.9 bits (64), Expect = 3.0
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 90 WQIDKKPKNGKGKQYSEN--FIRTEVLTKGG-----GKTENVKECDSHEENNGGLVKMTD 142
W D +P GK YS+ F + + G G+ + +C + E GG ++
Sbjct: 138 WPEDGRPYVALGKLYSKQSRFDKARAAYERGCQAAQGENPYIWQCWAVLERKGGNIRRAR 197
Query: 143 EELFAACEGRTAHKGARHGLRALG-KLARIAQQEEMLLMLPKYNGYSHAKNKGDEQIIED 201
E AA H A HG L K I + +L KY G G+E I +
Sbjct: 198 ELFDAATVADAKHIAAWHGWAILEIKQGNIKKARNLLAKGLKYCG-------GNEYIYQT 250
Query: 202 LSLQSEEAE 210
L+L AE
Sbjct: 251 LALLEARAE 259
>08_01_0167 +
1370733-1371316,1371590-1371765,1371865-1372101,
1372377-1372495,1372530-1372906,1373012-1373117,
1373520-1373606,1375367-1375421,1375775-1376311,
1377669-1377739,1377899-1377938,1379560-1379852
Length = 893
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 122 ENVKECDSHEENNGGLVKMTDEELFAACEGRTAHKG 157
E ++E D HE+ G VK D + G T H G
Sbjct: 191 ERLQELDEHEKKPQGTVKALDSHVTCEVCGNTGHSG 226
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 88 NTWQIDKKPKNGKGKQYSENFIRTEVLTKGGGKTENVKECDSHEENNGGL 137
NT +I K +NG+ Y N V+ G EN ++ S E +NG L
Sbjct: 425 NTKKIKKGGQNGEKGNYHRNNNIPTVVCSGSKSNENSEDMKSDEVSNGKL 474
>07_01_1018 - 8664851-8665495,8665525-8665935,8666374-8666580
Length = 420
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 124 VKECDSHEENNGGLVKMTDEELFAACEGRTAHKG 157
+K D HE+ G+VK D + G T H G
Sbjct: 138 MKRLDEHEKRPQGIVKALDSHVTCEVCGNTGHSG 171
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 222 CTSNEGMTVENSVVTASEVIESREIENVTTSVENIE 257
CTS EG T + +E ++ RE + SVE +
Sbjct: 59 CTSGEGATTSTAPALEAEKVDKREAPAASASVEGTQ 94
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 8 LEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
+ + + +G GLGK+ +GI + + P K G+G
Sbjct: 106 MAQMNYEEGTGLGKYGHGIIDPINPTKKYGKGGVG 140
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 8 LEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
+ + + +G GLGK+ +GI + + P K G+G
Sbjct: 39 MAQMNYEEGTGLGKYGHGIIDPINPTKKYGKGGVG 73
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.126 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,548,870
Number of Sequences: 37544
Number of extensions: 273823
Number of successful extensions: 555
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 18
length of query: 330
length of database: 14,793,348
effective HSP length: 82
effective length of query: 248
effective length of database: 11,714,740
effective search space: 2905255520
effective search space used: 2905255520
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -