GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003236-TA|BGIBMGA003236-PA|IPR005347|Protein of unknown
function UPF0131
         (143 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004360-1|AAH04360.1|  216|Homo sapiens LOC87769 protein protein.     95   6e-20
BC001077-1|AAH01077.2|  153|Homo sapiens LOC87769 protein protein.     95   6e-20
AL136526-6|CAI39558.1|  153|Homo sapiens protein ( Human DNA seq...    95   6e-20
BC040547-1|AAH40547.1|  216|Homo sapiens RAB37, member RAS oncog...    29   7.7  
BC016615-1|AAH16615.1|  223|Homo sapiens RAB37, member RAS oncog...    29   7.7  
AK098068-1|BAC05227.1|  223|Homo sapiens protein ( Homo sapiens ...    29   7.7  

>BC004360-1|AAH04360.1|  216|Homo sapiens LOC87769 protein protein.
          Length = 216

 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 53/129 (41%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 6   NGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDH 65
           +G A F A G T E YPL+IA ++N+P+LLH PG+G  V+GE+Y VD++ML  LD  E  
Sbjct: 88  HGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFESC 147

Query: 66  PNCYIRDKNDIVLTDS--------THRTVMKCWVYFLKMFKPELLSKPFLEDYKSEGDHG 117
           P  Y R    + L +            T ++C+VY    F PE    P  + Y SEG HG
Sbjct: 148 PALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATFPPEWAQLPHHDSYDSEGPHG 207

Query: 118 MRYCERCKR 126
           +RY  R  R
Sbjct: 208 LRYNPRENR 216


>BC001077-1|AAH01077.2|  153|Homo sapiens LOC87769 protein protein.
          Length = 153

 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 53/129 (41%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 6   NGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDH 65
           +G A F A G T E YPL+IA ++N+P+LLH PG+G  V+GE+Y VD++ML  LD  E  
Sbjct: 25  HGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFESC 84

Query: 66  PNCYIRDKNDIVLTDS--------THRTVMKCWVYFLKMFKPELLSKPFLEDYKSEGDHG 117
           P  Y R    + L +            T ++C+VY    F PE    P  + Y SEG HG
Sbjct: 85  PALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATFPPEWAQLPHHDSYDSEGPHG 144

Query: 118 MRYCERCKR 126
           +RY  R  R
Sbjct: 145 LRYNPRENR 153


>AL136526-6|CAI39558.1|  153|Homo sapiens protein ( Human DNA
           sequence from clone RP11-151A6 on chromosome
           13q32.21-33.3.  ).
          Length = 153

 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 53/129 (41%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 6   NGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDH 65
           +G A F A G T E YPL+IA ++N+P+LLH PG+G  V+GE+Y VD++ML  LD  E  
Sbjct: 25  HGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFESC 84

Query: 66  PNCYIRDKNDIVLTDS--------THRTVMKCWVYFLKMFKPELLSKPFLEDYKSEGDHG 117
           P  Y R    + L +            T ++C+VY    F PE    P  + Y SEG HG
Sbjct: 85  PALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATFPPEWAQLPHHDSYDSEGPHG 144

Query: 118 MRYCERCKR 126
           +RY  R  R
Sbjct: 145 LRYNPRENR 153


>BC040547-1|AAH40547.1|  216|Homo sapiens RAB37, member RAS oncogene
           family protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 25  IATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDHPNCYIRD 72
           +A +Y VPFL  S  TG NV+     +  ++        D P+  IRD
Sbjct: 154 LAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRD 201


>BC016615-1|AAH16615.1|  223|Homo sapiens RAB37, member RAS oncogene
           family protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 25  IATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDHPNCYIRD 72
           +A +Y VPFL  S  TG NV+     +  ++        D P+  IRD
Sbjct: 161 LAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRD 208


>AK098068-1|BAC05227.1|  223|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40749 fis, clone TRACH2000540, highly similar to
           Mus musculus GTPase Rab37 (Rab37) mRNA. ).
          Length = 223

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 25  IATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDHPNCYIRD 72
           +A +Y VPFL  S  TG NV+     +  ++        D P+  IRD
Sbjct: 161 LAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRD 208


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.140    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,219,751
Number of Sequences: 224733
Number of extensions: 890828
Number of successful extensions: 1408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 6
length of query: 143
length of database: 73,234,838
effective HSP length: 83
effective length of query: 60
effective length of database: 54,581,999
effective search space: 3274919940
effective search space used: 3274919940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)