GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003236-TA|BGIBMGA003236-PA|IPR005347|Protein of unknown
function UPF0131
         (143 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.18 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.18 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 4   PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILE 63
           PE+ + TF+          L   + Y     LH       +  E +E D K+  NL++L 
Sbjct: 304 PESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLT 363

Query: 64  D 64
           D
Sbjct: 364 D 364


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 4   PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILE 63
           PE+ + TF+          L   + Y     LH       +  E +E D K+  NL++L 
Sbjct: 304 PESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLT 363

Query: 64  D 64
           D
Sbjct: 364 D 364


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 30  NVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDI 61
           NV  +L    T YN+   + ++D   L++LDI
Sbjct: 505 NVTNILSMDNTQYNLDLSLPQLDSTELADLDI 536


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 102 LSKPFLEDYKSEGDHGMRYCERCKRD 127
           LSKP  ++  S GD+      R  RD
Sbjct: 9   LSKPGCDEQTSRGDNDRSRIARLGRD 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,501
Number of Sequences: 429
Number of extensions: 1762
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 143
length of database: 140,377
effective HSP length: 52
effective length of query: 91
effective length of database: 118,069
effective search space: 10744279
effective search space used: 10744279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)