GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003235-TA|BGIBMGA003235-PA|IPR001356|Homeobox
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    27   0.14 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.55 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.73 
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        24   1.3  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 25 TPAQVKMWYENYKKKCKMRAHDTQMSNGRLS 55
          T  QVK+W++N + K K R  + ++   RLS
Sbjct: 49 TETQVKIWFQNRRAKAK-RLQEAEIEKLRLS 78


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 25 TPAQVKMWYENYKKKCK 41
          T AQ+K+W++N + K K
Sbjct: 60 TEAQIKIWFQNKRAKIK 76


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 9  TICEEVNKRCGGERPRTPAQVKMWYENYKKKCK 41
          ++CE +N         T  QVK+W++N + K K
Sbjct: 34 SVCERLNLALS--LSLTETQVKIWFQNRRTKWK 64


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 25 TPAQVKMWYENYKKKCK 41
          T  QVK+W++N + K K
Sbjct: 21 TQTQVKIWFQNRRSKYK 37


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 27 AQVKMWYENYKKKCK 41
          AQ+K+W++N + K K
Sbjct: 62 AQIKIWFQNKRAKIK 76


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 25 TPAQVKMWYENYKKKCK 41
          T  Q+K+W++N + K K
Sbjct: 48 TERQIKIWFQNRRMKLK 64


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 25 TPAQVKMWYENYKKKCK 41
          T  Q+K+W++N + K K
Sbjct: 48 TERQIKIWFQNRRMKWK 64


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 25 TPAQVKMWYENYKKKCK 41
          T  Q+K+W++N + K K
Sbjct: 48 TERQIKIWFQNRRMKWK 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 25  TPAQVKMWYENYKKKCK 41
           T  Q+K+W++N + K K
Sbjct: 310 TERQIKIWFQNRRMKWK 326


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,665
Number of Sequences: 429
Number of extensions: 1698
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)