GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003233-TA|BGIBMGA003233-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    41   1e-05
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    39   5e-05
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    37   3e-04
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    36   5e-04
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    36   5e-04
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        33   0.003
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    30   0.024
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    30   0.024
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    30   0.032

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 171 KRQFHAKKYLSLTESLFNKPLIF-----QVKIWFQNRRAKWKRVKAGL 213
           + +F   +YLS+ E L N  L       QVKIWFQNRR KWK+   GL
Sbjct: 24  ENKFKTTRYLSVCERL-NLALSLSLTETQVKIWFQNRRTKWKKQNPGL 70


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)

Query: 171 KRQFHAKKYLSLTESL-FNKPLIF---QVKIWFQNRRAKWKRVK 210
           +++F  K+YL++ E   F+  L     QVKIWFQNRRAK KR++
Sbjct: 25  EKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 68


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 171 KRQFHAKKYLSLTESLFNKPLIF----QVKIWFQNRRAKWKRVKA 211
           +++FH  +YL+    +     +     Q+KIWFQNRR KWK+  A
Sbjct: 24  EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 171 KRQFHAKKYLSLTESLFNKPLIF----QVKIWFQNRRAKWKR 208
           +++FH  +YL+    +     +     Q+KIWFQNRR KWK+
Sbjct: 24  EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 65


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 171 KRQFHAKKYLSLTESLFNKPLIF----QVKIWFQNRRAKWKR 208
           +++FH  +YL+    +     +     Q+KIWFQNRR KWK+
Sbjct: 286 EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 327


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 12/16 (75%), Positives = 16/16 (100%)

Query: 194 QVKIWFQNRRAKWKRV 209
           QVKIWFQNRR+K+K++
Sbjct: 24  QVKIWFQNRRSKYKKM 39


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 11/15 (73%), Positives = 14/15 (93%)

Query: 194 QVKIWFQNRRAKWKR 208
           Q+KIWFQN+RAK K+
Sbjct: 63  QIKIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 11/15 (73%), Positives = 14/15 (93%)

Query: 194 QVKIWFQNRRAKWKR 208
           Q+KIWFQN+RAK K+
Sbjct: 63  QIKIWFQNKRAKIKK 77


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 11/15 (73%), Positives = 13/15 (86%)

Query: 194 QVKIWFQNRRAKWKR 208
           Q+KIWFQNRR K K+
Sbjct: 51  QIKIWFQNRRMKLKK 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,944
Number of Sequences: 429
Number of extensions: 2799
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 329
length of database: 140,377
effective HSP length: 58
effective length of query: 271
effective length of database: 115,495
effective search space: 31299145
effective search space used: 31299145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)