GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003228-TA|BGIBMGA003228-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site, IPR001548|Peptidase
M2, peptidyl-dipeptidase A
         (711 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   4.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   4.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   6.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   6.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   8.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 286 QVVPLYKQLFTYVRRRLFQRYGDVAL 311
           Q+ P+Y + F+Y +++L  R+G  A+
Sbjct: 128 QICPIYIESFSYHKQKLRLRWGTGAV 153


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 524 ENMNKRWWQMKLRYQGVIPPVPRTEGDFDPGSKYHIISDQEYIKYF 569
           +N NK+ +   +  + +  PVP   G+F P      IS QE I  F
Sbjct: 330 KNYNKKLYYNIINIEQIPVPVPVYCGNFPPRPMGPWISIQEQIPRF 375


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 525 NMNKRWWQMKLRYQGVIP-PVPRTEGDFDPGSKYHIISDQEYIKYF 569
           N  K ++ +    Q  +P PVP   G+F P S    IS QE I  F
Sbjct: 347 NYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEPWISMQEQIPRF 392


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 57  TVTKPQNSKFRVTMAQWK-FVTNITEHNRRPMMDELAL 93
           T+TK Q   + + + +W+ FV N  E N+R   DE+ L
Sbjct: 263 TLTKDQPETYEL-VKEWRDFVDNYAEENKR---DEIVL 296


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 526 MNKRWWQMKL 535
           MNK WW MK+
Sbjct: 363 MNKWWWNMKI 372


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,569
Number of Sequences: 429
Number of extensions: 9684
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 711
length of database: 140,377
effective HSP length: 63
effective length of query: 648
effective length of database: 113,350
effective search space: 73450800
effective search space used: 73450800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)