GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003227-TA|BGIBMGA003227-PA|IPR001611|Leucine-rich repeat
         (95 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    52   1e-09
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.37 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     19   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 52.0 bits (119), Expect = 1e-09
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 10  TINLAENEITVIEAQAFTDLY-LATVNVSHNQLSKIEPKAFQNCNNLTVLDLRYNNLTVI 68
           T+ L++N++  + AQ F  L+ L  + +S N ++ I+P AF+NC++L  LDL  N LT +
Sbjct: 387 TLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV 446

Query: 69  DRSAFDENTYAYELNVAHNHITDF 92
              A  +      L++  N I++F
Sbjct: 447 P-DALRDLALLKTLDLGENRISNF 469



 Score = 38.3 bits (85), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 11  INLAENEITVIEAQAFTDL-YLATVNVSHNQLSKIEPKAFQNCNNLTVLDLRYNNLTVID 69
           ++L  N I  I   A T L  L T N S+N L  +    F +  +L  + L YN L  + 
Sbjct: 242 LHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLP 301

Query: 70  RSAFDENTYAYELNVAHNHI 89
           +  F        LN+A N +
Sbjct: 302 KGIFTRLEQLLVLNLAGNRL 321



 Score = 37.1 bits (82), Expect = 4e-05
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 11  INLAENEITV--IEAQAFTDLY-LATVNVSHNQLSKIEPKAFQNCNNLTVLDLRYNNLTV 67
           +NLA N +    ++   F  L  L  +N+S+N L+ I+ + F++   L +LDLR N++  
Sbjct: 314 LNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDR 373

Query: 68  IDRSAF 73
           I+ +AF
Sbjct: 374 IESNAF 379



 Score = 35.1 bits (77), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 6   CTE-KTINLAENEITVIEAQAFTDL-YLATVNVSHNQLSKIEPKAFQNCNNLTVLDLRYN 63
           C++ K ++L+ NE+T +   A  DL  L T+++  N++S     +F+N + LT L L  N
Sbjct: 430 CSDLKELDLSGNELTSV-PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGN 488

Query: 64  NLTVIDRSAFDENTYAYELNVAHNHI 89
           ++  + R    +      LN+A N +
Sbjct: 489 DIGNLSRGMLWDLPNLQILNLARNKV 514



 Score = 31.5 bits (68), Expect = 0.002
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 2   STIKCTEKTINLAENEITVIEAQA-FTDL-YLATVNVSHNQLSKIEPKAFQNCNNLTVLD 59
           S+ +   + ++L+ NEIT ++  +   DL  L  +++  N + +I   A      L   +
Sbjct: 208 SSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFN 267

Query: 60  LRYNNLTVIDRSAFDENTYAYELNVAHNHITD 91
             YN+L  +    F       E+++A+N + D
Sbjct: 268 ASYNSLDSLPEGLFASTRDLREIHLAYNGLRD 299


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 0.37
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 45  EPKAFQNCNNLTVLDLRYNNLTVIDRSAFDENTYAYELNVAHNHITD 91
           +P+ F    +L VL +       +   AF E+    E+   H ++TD
Sbjct: 404 KPEGFMIPTHLKVLTIEEKPFVYVREIAFSESCLPEEILCPHFNVTD 450


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 55  LTVLDLRYNNLTVIDRSAFDENTYAYE 81
           LT   L Y N+    +S ++EN   YE
Sbjct: 271 LTSHSLYYVNMEPFMKSQYEENNIEYE 297


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 61 RYNNLTVIDR 70
          R+NN TV+D+
Sbjct: 19 RFNNQTVVDK 28


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 9   KTINLAENEITVIEAQAFTDLYLATVNVSHNQLSKIEPKAFQ 50
           K +     +  +++  A  D++  +    H+QL+ I  +  +
Sbjct: 400 KKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLK 441


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 9   KTINLAENEITVIEAQAFTDLYLATVNVSHNQLSKIEPKAFQ 50
           K +     +  +++  A  D++  +    H+QL+ I  +  +
Sbjct: 106 KKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLK 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,746
Number of Sequences: 429
Number of extensions: 1032
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 95
length of database: 140,377
effective HSP length: 49
effective length of query: 46
effective length of database: 119,356
effective search space:  5490376
effective search space used:  5490376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)