GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003221-TA|BGIBMGA003221-PA|IPR012973|NOG, C-terminal
         (563 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.95 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    26   0.95 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 320 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 353
           KE+  +K  R+R  ER I   L ++Y+ ++  NY
Sbjct: 64  KERSRDKRERERSKERKIISSLSNNYISNI-SNY 96


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 320 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 353
           KE+  +K  R+R  ER I   L ++Y+ ++  NY
Sbjct: 64  KERSRDKRERERSKERKIISSLSNNYISNI-SNY 96


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 320 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 353
           KE+  +K  R+R  ER I   L ++Y+ ++  NY
Sbjct: 302 KERSRDKTERERSKERKIISSLSNNYISNI-SNY 334


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 302 PRDDKPRPPVLPP 314
           P++ +P PPV PP
Sbjct: 38  PKEQEPLPPVTPP 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 416 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKT 453
           +REL +    K  ++K   R +K   K     T  AKT
Sbjct: 421 LRELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKAAKT 458


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 289  DGILNRLHVAVPAPRDDKPRPPVLPPSVLAKKEKQAEKENR 329
            +G++ +  V   A   ++P    +PP+ L  +  + +K  R
Sbjct: 1207 NGVITQYTVYTKADNAEEPTSQKVPPNQLTHEASELDKTRR 1247


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,099
Number of Sequences: 429
Number of extensions: 6221
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 6
length of query: 563
length of database: 140,377
effective HSP length: 61
effective length of query: 502
effective length of database: 114,208
effective search space: 57332416
effective search space used: 57332416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)