GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003216-TA|BGIBMGA003216-PA|IPR000642|Peptidase M41
         (282 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        28   0.081
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 0.081
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 72  AHMHNAPSWCGNDQRCTDCWWADVHSARRGPPQYPLTRTALAGRYHETKQQLLA 125
           A  HN+PS  G+  + +    +   +AR     YP    A A  +H+ +Q + A
Sbjct: 56  AQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAA 109


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 95  VHSARRGPPQYPLTRTALAGRYHETKQQL 123
           VH   +  PQ  LT + +   YHE  Q L
Sbjct: 466 VHDTLQIQPQEQLTLSKVTSNYHEEFQSL 494


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 240 DDIRALMNGEKTKLERGSKT 259
           DD+R +    KTK  +GS+T
Sbjct: 32  DDMRTVTKRPKTKKSQGSRT 51


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 67  SNQQAAHMHNAPSWCGND 84
           S Q ++H H + SW   D
Sbjct: 398 SGQSSSHHHGSKSWTQED 415


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,324
Number of Sequences: 429
Number of extensions: 1852
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 282
length of database: 140,377
effective HSP length: 57
effective length of query: 225
effective length of database: 115,924
effective search space: 26082900
effective search space used: 26082900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)