GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003214-TA|BGIBMGA003214-PA|IPR011046|WD40-like
         (729 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   5.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   8.8  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 87  ANFPGEHIIQGAFFHNGRRVVAVDKKSDAVIPEK---IQMLRFSPTLKGFGG 135
           A F    I  G FF +GR +V  D K D V+ ++   I++  F    +G  G
Sbjct: 87  AVFYASEIAIGLFFLHGRGIVYRDLKLDNVLLDQDGHIKIADFGMCKEGISG 138


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 23  NIIAFSSPTELSDV---DGATWGGHVY 46
           N++   SP + S+V   D   WG H+Y
Sbjct: 615 NVLVVVSPFDDSNVVQIDSPVWGRHIY 641


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,311
Number of Sequences: 429
Number of extensions: 6974
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 729
length of database: 140,377
effective HSP length: 63
effective length of query: 666
effective length of database: 113,350
effective search space: 75491100
effective search space used: 75491100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)