GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003213-TA|BGIBMGA003213-PA|undefined
         (1633 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    28   0.54 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    28   0.54 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    26   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    25   5.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   5.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   8.9  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 744 QLISRLRHIAVPLFKQPSGARTLSKRTRAEIPHFKDVLEDEISVWMDEISPNILKTHNKS 803
           Q  S  R+  + L K+    R L++R R EI H   + E +I +W         K H  +
Sbjct: 11  QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 70

Query: 804 S 804
           S
Sbjct: 71  S 71


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled receptor
            protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 1337 RDKDIEDFTNRLIDKLKSNKPSRSSGPAAELSADDEWTDVSSSARQDSSTQTSRALRPAA 1396
            R ++ +D    +  +   N+ S     A     DDE T+V+      +S++ +   R AA
Sbjct: 243  RHREADDAEESVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAA 302

Query: 1397 TASTSVQLPNTLTQEDQAHLSRIRERSKHL 1426
            T +T  Q    + +  +  LS+ R  ++ L
Sbjct: 303  TTTTVYQF---IEERQRISLSKERRAARTL 329


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 725 WLNKLVDAR-ELPNIMAGTDQLISRLRHIAVPLFKQPSGARTLSKRTRAEI 774
           ++NK++  R  + + + G D +  R+RH  + + +  S  R L K   A +
Sbjct: 407 FINKIIPIRMSIHDELLGADLVEHRIRHSQIGISRAMSALRILEKHELANV 457


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 750 RHIAVPLFKQPSGARTLSKRTRAEIPHFKDVLEDEISVW 788
           R+  + L K+    R L++R R EI H   + E +I +W
Sbjct: 17  RYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 55


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 750 RHIAVPLFKQPSGARTLSKRTRAEIPHFKDVLEDEISVW 788
           R+  + L K+    R L++R R EI H   + E +I +W
Sbjct: 279 RYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 317


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 253 SSLKGKIESILNKLPVAKDFDKKQMIGNIADNLVNKFINKE 293
           S+L GKI+     L + K FDKKQ  G I   L++  I+K+
Sbjct: 104 SALFGKIKPTAIGLSLIKGFDKKQG-GGI--ELISHIISKQ 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,065
Number of Sequences: 429
Number of extensions: 21187
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 6
length of query: 1633
length of database: 140,377
effective HSP length: 67
effective length of query: 1566
effective length of database: 111,634
effective search space: 174818844
effective search space used: 174818844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)