Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003208-TA|BGIBMGA003208-PA|IPR001781|LIM, zinc-binding,
IPR001356|Homeobox, IPR000047|Helix-turn-helix motif, lambda-like
repressor, IPR009057|Homeodomain-like
(315 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 54 2e-09
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 53 4e-09
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 43 3e-06
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 42 7e-06
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 41 1e-05
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 39 5e-05
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 38 2e-04
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 37 2e-04
AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein. 37 2e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 4.6
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 6.1
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 53.6 bits (123), Expect = 2e-09
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKR 189
KRPRT +A+QL LK ++ + R+QL+ D GL +++WFQN+RAK K+
Sbjct: 21 KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 52.8 bits (121), Expect = 4e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKR 189
KRPRT + +QL LK ++ + R+QL+ D GL+ +++WFQN+RAK K+
Sbjct: 21 KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKRLKK 192
++PRT T +QL +L+ + R + + L V++WFQNRRAK KRL++
Sbjct: 10 RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 69
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 41.9 bits (94), Expect = 7e-06
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKRLKK 192
KR R T T Q L+ + + R R ++AH L R +++WFQNRR K K+ K
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 330
Query: 193 DAG 195
G
Sbjct: 331 SKG 333
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKRLKK 192
KR RT+ T Q L+ + + R R ++AH L R +++WFQNRR K K+ K
Sbjct: 9 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 68
Query: 193 DA 194
A
Sbjct: 69 MA 70
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKR 189
KR R T T Q L+ + + R R ++AH L R +++WFQNRR K K+
Sbjct: 9 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 65
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 37.5 bits (83), Expect = 2e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKR 189
+R R T T Q L+ + + R R ++AH L R +++WFQNRR K K+
Sbjct: 9 RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 65
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 133 KRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKR 189
+R RT T +QL L++ + ++ + R LA L V++WFQNRR K K+
Sbjct: 9 RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65
>AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein.
Length = 43
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 162 REQLAHDTGLDMRVVQVWFQNRRAKEKRLKKDA 194
R +LA GL V++WFQNRR+K K++ K A
Sbjct: 11 RAELAASLGLTQTQVKIWFQNRRSKYKKMMKAA 43
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 4.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 151 YSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKSG 209
Y+ + RH+R +L T + VV + R E+ + GR RW QY ++ SG
Sbjct: 6 YARCIQERRHIRRELLRWTKNMVFVVGL----ERVAEELM----GRRRWKQYQDTLYSG 56
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 6.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 79 CFACAACARTLNT 91
C+ C C +TL+T
Sbjct: 371 CYTCDVCGKTLST 383
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.325 0.136 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,642
Number of Sequences: 429
Number of extensions: 2811
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 11
length of query: 315
length of database: 140,377
effective HSP length: 58
effective length of query: 257
effective length of database: 115,495
effective search space: 29682215
effective search space used: 29682215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)
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