GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003205-TA|BGIBMGA003205-PA|undefined
         (185 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.45 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.45 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 158 PPAQPAPLHTSSED 171
           PP  P PLHT  ED
Sbjct: 439 PPLPPLPLHTECED 452


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 158 PPAQPAPLHTSSED 171
           PP  P PLHT  ED
Sbjct: 439 PPLPPLPLHTECED 452


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 9   CADLERQELETPNGIASPSTYAQLLAIYLYQNDL 42
           C D+       P G  +P T A + A  L +N +
Sbjct: 81  CGDIAHTVKYCPKGTKNPGTLATVNAFKLLRNSM 114


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 108 RTLNLIGRSYSSIKIDKL 125
           R  NL+  S+SS K++KL
Sbjct: 18  RPSNLLRTSFSSAKLEKL 35


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 98  IRALEENVRERTLNLIGRSYSSIKIDKLISMIGLS 132
           I+ L+ +  +    L  R   S KI+ ++S++GL+
Sbjct: 2   IQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLA 36


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 98  IRALEENVRERTLNLIGRSYSSIKIDKLISMIGLS 132
           I+ L+ +  +    L  R   S KI+ ++S++GL+
Sbjct: 55  IQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLA 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,338
Number of Sequences: 429
Number of extensions: 2361
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 140,377
effective HSP length: 54
effective length of query: 131
effective length of database: 117,211
effective search space: 15354641
effective search space used: 15354641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)