Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003202-TA|BGIBMGA003202-PA|undefined
(425 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42412-1|AAC50495.1| 331|Homo sapiens 5'-AMP-activated protein ... 68 6e-11
BT007345-1|AAP36009.1| 331|Homo sapiens protein kinase, AMP-act... 68 6e-11
BC000358-1|AAH00358.1| 331|Homo sapiens protein kinase, AMP-act... 68 6e-11
AK097606-1|BAC05117.1| 340|Homo sapiens protein ( Homo sapiens ... 68 6e-11
BT007127-1|AAP35791.1| 328|Homo sapiens protein kinase, AMP-act... 66 3e-10
BC068598-1|AAH68598.1| 525|Homo sapiens protein kinase, AMP-act... 66 3e-10
BC020540-1|AAH20540.2| 341|Homo sapiens PRKAG2 protein protein. 66 3e-10
AK001887-1|BAA91962.1| 328|Homo sapiens protein ( Homo sapiens ... 66 3e-10
AJ249976-1|CAB65116.1| 569|Homo sapiens AMP-activated protein k... 66 3e-10
AF087875-1|AAK00413.1| 328|Homo sapiens AMP-activated protein k... 66 3e-10
AC006966-1|AAF03528.2| 317|Homo sapiens unknown protein. 66 3e-10
AB025580-1|BAA84695.1| 352|Homo sapiens H91620p protein. 66 3e-10
BC098306-1|AAH98306.1| 489|Homo sapiens protein kinase, AMP-act... 62 5e-09
BC098277-1|AAH98277.1| 489|Homo sapiens protein kinase, AMP-act... 62 5e-09
BC098255-1|AAH98255.1| 489|Homo sapiens AMP-activated protein k... 62 5e-09
BC098102-1|AAH98102.1| 489|Homo sapiens protein kinase, AMP-act... 62 5e-09
AJ249977-1|CAB65117.1| 492|Homo sapiens AMP-activated protein k... 62 5e-09
AF214519-1|AAF73987.1| 464|Homo sapiens AMP-activated protein k... 62 5e-09
BC117246-1|AAI17247.1| 707|Homo sapiens F-box and WD repeat dom... 33 1.4
BC117244-1|AAI17245.1| 707|Homo sapiens F-box and WD repeat dom... 33 1.4
AY049984-1|AAL07271.1| 707|Homo sapiens F-box protein CDC4 prot... 33 1.4
AF411971-1|AAL06290.1| 707|Homo sapiens archipelago alpha form ... 33 1.4
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-... 31 5.8
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 5.8
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 31 5.8
>U42412-1|AAC50495.1| 331|Homo sapiens 5'-AMP-activated protein
kinase, gamma-1 subunit protein.
Length = 331
Score = 68.1 bits (159), Expect = 6e-11
Identities = 24/53 (45%), Positives = 41/53 (77%)
Query: 280 NFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+F K H+CY+++P S+K+++FDT V+K F L+++G+R+APLWD+ K+ V
Sbjct: 31 SFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFV 83
>BT007345-1|AAP36009.1| 331|Homo sapiens protein kinase,
AMP-activated, gamma 1 non-catalytic subunit protein.
Length = 331
Score = 68.1 bits (159), Expect = 6e-11
Identities = 24/53 (45%), Positives = 41/53 (77%)
Query: 280 NFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+F K H+CY+++P S+K+++FDT V+K F L+++G+R+APLWD+ K+ V
Sbjct: 31 SFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFV 83
>BC000358-1|AAH00358.1| 331|Homo sapiens protein kinase,
AMP-activated, gamma 1 non-catalytic subunit protein.
Length = 331
Score = 68.1 bits (159), Expect = 6e-11
Identities = 24/53 (45%), Positives = 41/53 (77%)
Query: 280 NFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+F K H+CY+++P S+K+++FDT V+K F L+++G+R+APLWD+ K+ V
Sbjct: 31 SFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFV 83
>AK097606-1|BAC05117.1| 340|Homo sapiens protein ( Homo sapiens
cDNA FLJ40287 fis, clone TESTI2027909, highly similar to
5'-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT. ).
Length = 340
Score = 68.1 bits (159), Expect = 6e-11
Identities = 24/53 (45%), Positives = 41/53 (77%)
Query: 280 NFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+F K H+CY+++P S+K+++FDT V+K F L+++G+R+APLWD+ K+ V
Sbjct: 31 SFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFV 83
>BT007127-1|AAP35791.1| 328|Homo sapiens protein kinase,
AMP-activated, gamma 2 non-catalytic subunit protein.
Length = 328
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 21 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 74
>BC068598-1|AAH68598.1| 525|Homo sapiens protein kinase,
AMP-activated, gamma 2 non-catalytic subunit protein.
Length = 525
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 218 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 271
>BC020540-1|AAH20540.2| 341|Homo sapiens PRKAG2 protein protein.
Length = 341
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 34 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 87
>AK001887-1|BAA91962.1| 328|Homo sapiens protein ( Homo sapiens
cDNA FLJ11025 fis, clone PLACE1003968, moderately
similar to 5'-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1
SUBUNIT. ).
Length = 328
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 21 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 74
>AJ249976-1|CAB65116.1| 569|Homo sapiens AMP-activated protein
kinase gamma2 subunit protein.
Length = 569
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 262 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 315
>AF087875-1|AAK00413.1| 328|Homo sapiens AMP-activated protein
kinase gamma subunit protein.
Length = 328
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 21 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 74
>AC006966-1|AAF03528.2| 317|Homo sapiens unknown protein.
Length = 317
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 10 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 63
>AB025580-1|BAA84695.1| 352|Homo sapiens H91620p protein.
Length = 352
Score = 65.7 bits (153), Expect = 3e-10
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 279 LNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
+ F + HKCY+++P S+K+++FDT V+K F L+++G+R+APLW++ K+ V
Sbjct: 45 MRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFV 98
>BC098306-1|AAH98306.1| 489|Homo sapiens protein kinase,
AMP-activated, gamma 3 non-catalytic subunit protein.
Length = 489
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 182 QIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 238
>BC098277-1|AAH98277.1| 489|Homo sapiens protein kinase,
AMP-activated, gamma 3 non-catalytic subunit protein.
Length = 489
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 182 QIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 238
>BC098255-1|AAH98255.1| 489|Homo sapiens AMP-activated protein
kinase, non-catalytic gamma-3 subunit protein.
Length = 489
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 182 QIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 238
>BC098102-1|AAH98102.1| 489|Homo sapiens protein kinase,
AMP-activated, gamma 3 non-catalytic subunit protein.
Length = 489
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 182 QIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 238
>AJ249977-1|CAB65117.1| 492|Homo sapiens AMP-activated protein
kinase gamma 3 subunit protein.
Length = 492
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 182 QIYMRFIEEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 238
>AF214519-1|AAF73987.1| 464|Homo sapiens AMP-activated protein
kinase gamma subunit protein.
Length = 464
Score = 61.7 bits (143), Expect = 5e-09
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 276 RLLLNFFKYHKCYEMLPKSAKVIIFDTQFYVRKTFPTLISHGIRSAPLWDASKKLLV 332
++ + F + H CY+ + S+K++IFDT ++K F L+++G+R+APLWD+ K+ V
Sbjct: 157 QIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFV 213
>BC117246-1|AAI17247.1| 707|Homo sapiens F-box and WD repeat domain
containing 7 protein.
Length = 707
Score = 33.5 bits (73), Expect = 1.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 342 KENESDTISIEVPVLGNQAVPEVNEEKTAEND--DTGEVACNVECVDAETTADGNVEKSL 399
+EN + IS++ GNQ E +EE E D D E + E D + + D + E
Sbjct: 78 EENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSRED-- 135
Query: 400 ENDICNDCDDAEMNIDTPVVQCSS 423
E+ N ++ +D PV Q SS
Sbjct: 136 EHTHTNSVTNSSSIVDLPVHQLSS 159
>BC117244-1|AAI17245.1| 707|Homo sapiens F-box and WD repeat domain
containing 7 protein.
Length = 707
Score = 33.5 bits (73), Expect = 1.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 342 KENESDTISIEVPVLGNQAVPEVNEEKTAEND--DTGEVACNVECVDAETTADGNVEKSL 399
+EN + IS++ GNQ E +EE E D D E + E D + + D + E
Sbjct: 78 EENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSRED-- 135
Query: 400 ENDICNDCDDAEMNIDTPVVQCSS 423
E+ N ++ +D PV Q SS
Sbjct: 136 EHTHTNSVTNSSSIVDLPVHQLSS 159
>AY049984-1|AAL07271.1| 707|Homo sapiens F-box protein CDC4
protein.
Length = 707
Score = 33.5 bits (73), Expect = 1.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 342 KENESDTISIEVPVLGNQAVPEVNEEKTAEND--DTGEVACNVECVDAETTADGNVEKSL 399
+EN + IS++ GNQ E +EE E D D E + E D + + D + E
Sbjct: 78 EENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSRED-- 135
Query: 400 ENDICNDCDDAEMNIDTPVVQCSS 423
E+ N ++ +D PV Q SS
Sbjct: 136 EHTHTNSVTNSSSIVDLPVHQLSS 159
>AF411971-1|AAL06290.1| 707|Homo sapiens archipelago alpha form
protein.
Length = 707
Score = 33.5 bits (73), Expect = 1.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 342 KENESDTISIEVPVLGNQAVPEVNEEKTAEND--DTGEVACNVECVDAETTADGNVEKSL 399
+EN + IS++ GNQ E +EE E D D E + E D + + D + E
Sbjct: 78 EENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSRED-- 135
Query: 400 ENDICNDCDDAEMNIDTPVVQCSS 423
E+ N ++ +D PV Q SS
Sbjct: 136 EHTHTNSVTNSSSIVDLPVHQLSS 159
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-27
protein.
Length = 148
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 9 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 68
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 69 SNKRSRSGSQGRT 81
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 31.5 bits (68), Expect = 5.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 158 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 215
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 216 NSKEVRRSSIGTT 228
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.310 0.126 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,693,128
Number of Sequences: 224733
Number of extensions: 1986242
Number of successful extensions: 4395
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4377
Number of HSP's gapped (non-prelim): 30
length of query: 425
length of database: 73,234,838
effective HSP length: 92
effective length of query: 333
effective length of database: 52,559,402
effective search space: 17502280866
effective search space used: 17502280866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 67 (31.1 bits)
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