GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003202-TA|BGIBMGA003202-PA|undefined
         (425 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 345 ESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVACNVECVDAETTADGNVEKSLENDIC 404
           E  +I I   +   Q   E+ +      +D  EV      ++ E T    + ++ EN + 
Sbjct: 144 EGHSIGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVN 203

Query: 405 NDCDDA 410
              +DA
Sbjct: 204 RILNDA 209


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 404 CNDCDDAEMNIDTPVVQ-CSS 423
           C DCD+   ++DT  +Q C S
Sbjct: 328 CLDCDEIRESLDTQFLQVCRS 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.126    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,483
Number of Sequences: 429
Number of extensions: 4679
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 425
length of database: 140,377
effective HSP length: 60
effective length of query: 365
effective length of database: 114,637
effective search space: 41842505
effective search space used: 41842505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)