GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003201-TA|BGIBMGA003201-PA|undefined
         (386 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.7  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 138 DLLKNIEFTLFALNRTPEFVVIESMAHFYAVLCRYFK 174
           D+LK   FT+  LN+T   VV +S     ++L  + K
Sbjct: 475 DVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSK 511


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 196 PLIKQCLDVWMLILPLAHMGIAKSP 220
           P+I + L VW L   + H  +A +P
Sbjct: 3   PIIGETLRVWFLSALVVHGAVAGNP 27


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 196 PLIKQCLDVWMLILPLAHMGIAKSP 220
           P+I + L VW L   + H  +A +P
Sbjct: 3   PIIGETLRVWFLSALVVHGAVAGNP 27


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 256 VTEWNEPKIMEMLKSSIMEIRKRENVPSRVKEFCLSMLGPLMKPYPADMKVHCEVVMNQL 315
           V EW  P+ +   +  +      E    R +E  +    P  K +   M  +  VV   +
Sbjct: 571 VAEWEPPRALWPTEWKVRPSTVEEREEFRRQER-MRYAAP-HKAFTYRMHGYASVV-GPV 627

Query: 316 IDMFQQNTSQQLKEAIVKSLLYMDRHNQCRVIKVLID 352
             ++Q N +  L +A   SLL  DR N   ++ ++ D
Sbjct: 628 KGIYQHNVASGLTKARGHSLLVADRPNFVTILALVRD 664


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 118 VLLYIISQLNMSYSSTDIVEDLLKNIEFTLFALNRTPEFVVIESMAHFY 166
           ++ ++   L +  ++  +V D  K  E    AL+ TP + V+ S   FY
Sbjct: 155 LISFVPISLGLHRANEPVVLDDSKE-EHPTCALDLTPTYAVVSSSISFY 202


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 274 EIRKRENVPSRVKEFCLSMLGPLMKPYPADMKVHCEV-VMNQLIDMFQ 320
           E +K + +  R+ + C+  +G  +KP   + ++   V V   ++D+ Q
Sbjct: 258 EYKKIQQILIRMNKLCIQTIGGQIKPRKHEQRLLRNVGVHTVVLDLLQ 305


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,995
Number of Sequences: 429
Number of extensions: 4523
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 386
length of database: 140,377
effective HSP length: 59
effective length of query: 327
effective length of database: 115,066
effective search space: 37626582
effective search space used: 37626582
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)