GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003197-TA|BGIBMGA003197-PA|IPR001892|Ribosomal protein
S13, IPR010979|Ribosomal protein S13-like, H2TH
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    27   0.095
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.67 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.67 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 0.095
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 63  KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLRED-LERLKKI 102
           KI  WFL++ K+I+D  Y  L +++   +L  D L R K+I
Sbjct: 275 KIDKWFLHKMKNIID-YYLVLENTDHTKQLSHDVLLRAKQI 314


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 72   QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 104
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1781 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1813


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 72   QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 104
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1777 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1809


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
          Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 21 VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITI 55
          +G+R S  V         K A   T +E+EKI T+
Sbjct: 3  LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,109
Number of Sequences: 429
Number of extensions: 1465
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)