GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003196-TA|BGIBMGA003196-PA|IPR002843|ATPase, V0/A0
complex, subunit C/D
         (348 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   9.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 157 LAPFFVDCISEQDLDEMNIEIIRN 180
           + P F+  + EQ L E N+E +R+
Sbjct: 149 ILPIFLYALGEQPLTEQNLEELRD 172


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 157 LAPFFVDCISEQDLDEMNIEIIRN 180
           + P F+  + EQ L E N+E +R+
Sbjct: 187 ILPIFLYALGEQPLTEQNLEELRD 210


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 287 LEDKFFEHEVSLNVHAFLQQFHF-GVFYSYLKLKEQECRNIV 327
           ++D F EH+ +L  +  +QQ  F G+  + +KL   + RNI+
Sbjct: 408 VDDVFQEHKNTLPQYT-VQQLDFPGIEIADIKLTTNQQRNIL 448


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 170 LDEMNIEIIRNTLYKAYL 187
           L E N ++ R+ LYK YL
Sbjct: 674 LTETNPKLARSVLYKIYL 691


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,261
Number of Sequences: 429
Number of extensions: 4089
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 348
length of database: 140,377
effective HSP length: 58
effective length of query: 290
effective length of database: 115,495
effective search space: 33493550
effective search space used: 33493550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)