GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003187-TA|BGIBMGA003187-PA|IPR004088|KH, type 1,
IPR004087|KH, IPR009210|Predicted eukaryotic LigT
         (306 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 87  IPKHDQTGDVVILG 100
           IP HD T DV+++G
Sbjct: 413 IPLHDATRDVILVG 426


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 139 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 196
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 139 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 196
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 139 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 196
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,317
Number of Sequences: 429
Number of extensions: 3145
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 306
length of database: 140,377
effective HSP length: 58
effective length of query: 248
effective length of database: 115,495
effective search space: 28642760
effective search space used: 28642760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)