GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003186-TA|BGIBMGA003186-PA|IPR014014|DEAD-box RNA
helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal,
IPR000629|ATP-dependent helicase, DEAD-box, IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal,
IPR014021|Helicase superfamily 1 and 2 ATP-binding
         (420 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      180   3e-47

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  180 bits (437), Expect = 3e-47
 Identities = 105/344 (30%), Positives = 189/344 (54%), Gaps = 18/344 (5%)

Query: 44  QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 103
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 104 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 154
            I+     + +D  +     E Q +I++PTREL  QI + ++    +   K     GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312

Query: 155 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI---- 210
           V     +L +G H++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I    
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372

Query: 211 -HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIEL 269
            H+    L  + Q ++ SAT PD+V  ++R F+ + + + V         ++Q +  +  
Sbjct: 373 DHETMVPL-GERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVAR 431

Query: 270 EEWK---LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQRERE 326
            + K    E L    D+ ++   ++F   ++K D++   +   ++  +++HGD  QR+RE
Sbjct: 432 NKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491

Query: 327 VIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 370
             +  F++G   +L+ T + ARG+D++ VS VINYDLP   + Y
Sbjct: 492 EALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEY 535


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,893
Number of Sequences: 429
Number of extensions: 4103
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 1
length of query: 420
length of database: 140,377
effective HSP length: 59
effective length of query: 361
effective length of database: 115,066
effective search space: 41538826
effective search space used: 41538826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)