GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003184-TA|BGIBMGA003184-PA|IPR013878|Mo25-like
         (259 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 46  IKNMLYGTSDAEPQTDIIVAQLAQ 69
           IKNM+ GTS A+    I+ A + +
Sbjct: 99  IKNMITGTSQADCAVLIVAAGIGE 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 5    GKSQKSPA--ELVRS---LKDAVTALERGDKKAEKAQEDVSKNLVL 45
            GK ++SP   ELV +   +KD V  ++RG+K     Q+ V  +++L
Sbjct: 1289 GKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRTCQKAVVLSMLL 1334


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 16  RSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNML 50
           R L D V ALE   K   K  +  S+ +  ++N+L
Sbjct: 342 RHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVL 376


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
          1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 46 IKNMLYGTSDAEPQTDIIVA 65
          IKNM+ GTS A+    I+ A
Sbjct: 26 IKNMITGTSQADCAVLIVAA 45


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
          1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 46 IKNMLYGTSDAEPQTDIIVA 65
          IKNM+ GTS A+    I+ A
Sbjct: 42 IKNMITGTSQADCAVLIVAA 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 46  IKNMLYGTSDAEPQTDIIVA 65
           IKNM+ GTS A+    I+ A
Sbjct: 99  IKNMITGTSQADCAVLIVAA 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,079
Number of Sequences: 429
Number of extensions: 2061
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 259
length of database: 140,377
effective HSP length: 56
effective length of query: 203
effective length of database: 116,353
effective search space: 23619659
effective search space used: 23619659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)