GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003181-TA|BGIBMGA003181-PA|undefined
         (54 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   3.6  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 1   MFKGLIIFGAGVYTG 15
           +FKG +  GAG+  G
Sbjct: 87  LFKGFVHLGAGLAVG 101


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 16   VYVAQNYQIEKVEDPKALFE 35
            + V++N   +KVE+ + +FE
Sbjct: 1536 IVVSRNKAYQKVEENEIIFE 1555


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 16  VYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQD 50
           +Y   NY I+  E+ + L  K    +  K   V+D
Sbjct: 286 IYEESNYGIKAFEELEELLGKRNICIAIKEKLVKD 320


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893
Number of Sequences: 429
Number of extensions: 245
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 140,377
effective HSP length: 34
effective length of query: 20
effective length of database: 125,791
effective search space:  2515820
effective search space used:  2515820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)