GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003178-TA|BGIBMGA003178-PA|IPR002293|Amino
acid/polyamine transporter I, IPR004841|Amino acid permease-associated
region
         (497 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 326 LNGAIYTSSRLFFV 339
           LNG++Y  +RLFF+
Sbjct: 3   LNGSLYCFARLFFI 16


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 69  GSKGMALIVWVLSGFLSMIGALCY 92
           G + +  I W L+G L+++  +CY
Sbjct: 198 GIENIGSIRWELAGTLAVVWIMCY 221


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 69  GSKGMALIVWVLSGFLSMIGALCY 92
           G + +  I W L+G L+++  +CY
Sbjct: 251 GIENIGSIRWELAGTLAVVWIMCY 274


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 272 VTLVYTLTNVAYFAVLSSDEILSSSAVAVTFSEKILK 308
           V+++Y  +N    A    +E+L    + +   EK++K
Sbjct: 283 VSIIYEESNYGIKAFEELEELLGKRNICIAIKEKLVK 319


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,370
Number of Sequences: 429
Number of extensions: 5395
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 497
length of database: 140,377
effective HSP length: 60
effective length of query: 437
effective length of database: 114,637
effective search space: 50096369
effective search space used: 50096369
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)