GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003172-TA|BGIBMGA003172-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding
         (62 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   0.071
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.12 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   0.29 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   2.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    19   6.2  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 25.0 bits (52), Expect = 0.071
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 10 GERDTPSPARPLPPATSCNCEELLSVD 36
          G  + P    PLPP T    E +L +D
Sbjct: 33 GSAEQPKEQEPLPPVTPPQGENMLDMD 59


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.12
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 5   VHTELGERDTPSPARPLPPATSCNCEELLSVD--CQLETKE 43
           V+  LG+ DTP    P PP  S +  +   +D    + TKE
Sbjct: 328 VNIVLGDSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKE 368


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 0.29
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 6   HTELGERDTPSPARPLPPATS 26
           H + GE D P   +P PP+ +
Sbjct: 284 HPDPGEVDLPPETQPTPPSAT 304


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 28 NCEELLSVDCQLETKELWDK 47
          +CE++  +  +   K+LWDK
Sbjct: 73 HCEKVGCICRKTSFKDLWDK 92


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 28 NCEELLSVDCQLETKELWDK 47
          +CE+ + +  +   K+LWDK
Sbjct: 73 HCEKGVCICRKTSFKDLWDK 92


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 26  SCNCEELLSVDCQLETKELWD 46
           +C+CE      C+      W+
Sbjct: 754 ACDCEMTCPAGCKCYNDRTWN 774


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 17  PARPLPPATSCNC 29
           P + +  +T+CNC
Sbjct: 141 PIKRVKDSTNCNC 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,750
Number of Sequences: 429
Number of extensions: 599
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 140,377
effective HSP length: 42
effective length of query: 20
effective length of database: 122,359
effective search space:  2447180
effective search space used:  2447180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)