GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003171-TA|BGIBMGA003171-PA|IPR001102|Transglutaminase,
N-terminal, IPR002931|Transglutaminase-like,
IPR013807|Transglutaminase, C-terminal,
IPR008958|Transglutaminase-like, C-terminal
         (747 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   3.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 640 DGKPVSRQEFTVHIKVENPLPIPLKNGKFYIQG--PGLDEQLRIALDE 685
           DG PV+      H K ++P   P  N +++  G   GL    RI +DE
Sbjct: 208 DGIPVTLTTVPKHSKTKSPKLRPYPNWEWHTVGNCDGLTSVFRIQVDE 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 117 LLERGSETVGLWSAVYDSQVDSHLMVSVTAAA 148
           LL+RG ET   W  +  + +  ++   + AAA
Sbjct: 741 LLQRGQETGAEWPGLEHANIGPYIQKMIAAAA 772


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,972
Number of Sequences: 429
Number of extensions: 9941
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 747
length of database: 140,377
effective HSP length: 63
effective length of query: 684
effective length of database: 113,350
effective search space: 77531400
effective search space used: 77531400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)