GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003170-TA|BGIBMGA003170-PA|IPR002931|Transglutaminase-
like, IPR001102|Transglutaminase, N-terminal,
IPR013807|Transglutaminase, C-terminal,
IPR008958|Transglutaminase-like, C-terminal
         (953 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    26   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   8.9  

>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 32  MPSNYVPGLSAYYNISSFCQRPGQTRRW-PMQRAGPTAQH 70
           +PS+Y+  + A     +F  RP   R W PM+   P ++H
Sbjct: 330 IPSHYIEQIPAPVYYGNFPPRPIMVRPWVPMRGQVPGSRH 369


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 670 IRMASNQYQVGRKILTKNPSRDDDEGESDMLEITHEYKTVDSSSPER 716
           +   +   Q   K   +   +DDDE +++ ++   E+    SS  ER
Sbjct: 68  VNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDER 114


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 652 INAELCHFQEEENSEWGFIRMASNQYQ 678
           INAE  + +E  N    F R+A+N  Q
Sbjct: 560 INAEPSNIEESNNMTDSFTRIANNTIQ 586


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,217
Number of Sequences: 429
Number of extensions: 12523
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 953
length of database: 140,377
effective HSP length: 64
effective length of query: 889
effective length of database: 112,921
effective search space: 100386769
effective search space used: 100386769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)