GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003169-TA|BGIBMGA003169-PA|IPR013261|Mitochondrial TIM21
         (212 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.93 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   8.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 1   MTLISKFLPLLRNGSTTEKIPAILQTKFRTNTRYFSSEKESGLTK 45
           +TL++K   L   G  + K PAI ++    N  YF  +++S + K
Sbjct: 132 VTLMTK-ATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMK 175


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 43  LTKSKSKESASHVSTDVRPLGEKIKETTKTVSY 75
           +  S   ES   V T   PLG +I+ +T+T+ +
Sbjct: 289 VNNSVGGESVETVLTVTAPLGAEIEPSTQTIDF 321


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 32  TRYFSSEKESGLTKSKSKESASHVSTDVRPL-GEKIKETTK 71
           T+Y S E       S+S+ S+     D RPL  E I ++ K
Sbjct: 301 TKYGSGECYFSSDLSESETSSDEEEADTRPLKKEPITQSNK 341


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 2   TLISKFLPLLRNGSTTEKIPAILQTKFRTNTRYFSSEKE 40
           T  ++F+ +  +GS T  I   +      N +YF  +++
Sbjct: 112 TTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQ 150


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 2   TLISKFLPLLRNGSTTEKIPAILQTKFRTNTRYFSSEKE 40
           T  ++F+ +  +GS T  I   +      N +YF  +++
Sbjct: 112 TTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQ 150


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
          subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 2  TLISKFLPLLRNGSTTEKIPAILQTKFRTNTRYFSSEKE 40
          T  ++F+ +  +GS T  I   +      N +YF  +++
Sbjct: 51 TTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQ 89


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 18  EKIPAILQTKFRTNTRYFSSEKESGLTKSKSKESASHVSTD 58
           + + +I    F+T T+   S K + L +    E   H+ST+
Sbjct: 82  QTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTN 122


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,673
Number of Sequences: 429
Number of extensions: 1453
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 212
length of database: 140,377
effective HSP length: 55
effective length of query: 157
effective length of database: 116,782
effective search space: 18334774
effective search space used: 18334774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)