GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003167-TA|BGIBMGA003167-PA|IPR008957|Fibronectin, type
III-like fold
         (384 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 91   RRGRAYSTRITGLRMATTYSFEV 113
            R+  A +T +TGLR  T Y+ +V
Sbjct: 1168 RKTSALTTVLTGLRKYTNYTIQV 1190


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 91   RRGRAYSTRITGLRMATTYSFEV 113
            R+  A +T +TGLR  T Y+ +V
Sbjct: 1164 RKTSALTTVLTGLRKYTNYTIQV 1186


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 100 ITGLRMATTYSFEV 113
           ITGL   TTY F+V
Sbjct: 379 ITGLNAVTTYRFQV 392


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,371
Number of Sequences: 429
Number of extensions: 4239
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 384
length of database: 140,377
effective HSP length: 59
effective length of query: 325
effective length of database: 115,066
effective search space: 37396450
effective search space used: 37396450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)