Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003166-TA|BGIBMGA003166-PA|IPR003196|Transcription
initiation factor IIF, beta subunit, IPR011039|Transcription Factor
IIF, Rap30/Rap74, interaction
(262 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein. 238 2e-62
X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74... 238 2e-62
BT019525-1|AAV38332.1| 249|Homo sapiens general transcription f... 238 2e-62
BC001771-1|AAH01771.1| 249|Homo sapiens general transcription f... 238 2e-62
AL138963-1|CAH72032.1| 249|Homo sapiens general transcription f... 238 2e-62
AL138693-1|CAH72459.1| 249|Homo sapiens general transcription f... 238 2e-62
BC126124-1|AAI26125.1| 840|Homo sapiens heat shock 70kDa protei... 38 0.047
BC126122-1|AAI26123.1| 840|Homo sapiens heat shock 70kDa protei... 38 0.047
BC110861-1|AAI10862.1| 840|Homo sapiens heat shock 70kDa protei... 38 0.047
AB023420-1|BAA75062.1| 840|Homo sapiens apg-2 protein. 38 0.047
DQ090887-1|AAY99645.1| 1196|Homo sapiens AHI1 protein. 33 0.76
BC094800-1|AAH94800.1| 609|Homo sapiens AHI1 protein protein. 33 0.76
BC065712-1|AAH65712.1| 590|Homo sapiens AHI1 protein protein. 33 0.76
BC029417-1|AAH29417.1| 310|Homo sapiens AHI1 protein protein. 33 0.76
AL133544-3|CAI22523.1| 1168|Homo sapiens protein ( Human DNA seq... 33 0.76
AL049552-2|CAI20387.1| 1168|Homo sapiens protein ( EB-RP (G13), ... 33 0.76
AL023693-5|CAI20201.1| 1168|Homo sapiens protein ( Human DNA seq... 33 0.76
AK092262-1|BAC03840.1| 1196|Homo sapiens protein ( Homo sapiens ... 33 0.76
AJ606362-1|CAE54481.1| 1196|Homo sapiens AHI1 protein protein. 33 0.76
AJ459825-1|CAD30872.1| 1053|Homo sapiens AHI1 protein protein. 33 0.76
AJ459824-1|CAD30871.1| 1196|Homo sapiens AHI1 protein protein. 33 0.76
BC113114-1|AAI13115.1| 1354|Homo sapiens Rho-associated, coiled-... 31 3.1
L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein p... 31 4.1
BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair cross-c... 31 4.1
AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair cross-c... 31 4.1
AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair cross-c... 31 4.1
AB209504-1|BAD92741.1| 870|Homo sapiens excision repair cross-c... 31 4.1
AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein. 31 5.4
U43195-1|AAB02814.1| 1354|Homo sapiens Rho-associated, coiled-co... 30 7.1
M20020-1|AAA60288.1| 249|Homo sapiens RPS6 protein. 30 9.4
>X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74
protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>BT019525-1|AAV38332.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>BC001771-1|AAH01771.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>AL138963-1|CAH72032.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>AL138693-1|CAH72459.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 238 bits (582), Expect = 2e-62
Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 18/249 (7%)
Query: 3 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 60
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 61 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 116
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 117 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 175
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 176 KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWE 235
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT+QP+VYLKEILKE+ N++ HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 236 LKPEYRHYK 244
LKPEYRHY+
Sbjct: 235 LKPEYRHYQ 243
>BC126124-1|AAI26125.1| 840|Homo sapiens heat shock 70kDa protein 4
protein.
Length = 840
Score = 37.5 bits (83), Expect = 0.047
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 142 RQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIK 201
+Q+QQ +I+ +FK D ++D + K E K + E + N L N++
Sbjct: 704 KQIQQYMKIISSFKNKEDQYDHLDAADMTKVE-KSTNEAMEWMNNKL----------NLQ 752
Query: 202 DLQKITRQPIVYLKEI---LKEV---CNYNLRNPHKNMWELKPEYRHYKQDVPVETKED 254
+ Q +T P+V KEI +KE+ C+ + P + K E ++ +Q+ PV+ + D
Sbjct: 753 NKQSLTMDPVVKSKEIEAKIKELTSTCSPIISKPKPKVEPPKEEQKNAEQNGPVDGQGD 811
>BC126122-1|AAI26123.1| 840|Homo sapiens heat shock 70kDa protein 4
protein.
Length = 840
Score = 37.5 bits (83), Expect = 0.047
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 142 RQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIK 201
+Q+QQ +I+ +FK D ++D + K E K + E + N L N++
Sbjct: 704 KQIQQYMKIISSFKNKEDQYDHLDAADMTKVE-KSTNEAMEWMNNKL----------NLQ 752
Query: 202 DLQKITRQPIVYLKEI---LKEV---CNYNLRNPHKNMWELKPEYRHYKQDVPVETKED 254
+ Q +T P+V KEI +KE+ C+ + P + K E ++ +Q+ PV+ + D
Sbjct: 753 NKQSLTMDPVVKSKEIEAKIKELTSTCSPIISKPKPKVEPPKEEQKNAEQNGPVDGQGD 811
>BC110861-1|AAI10862.1| 840|Homo sapiens heat shock 70kDa protein 4
protein.
Length = 840
Score = 37.5 bits (83), Expect = 0.047
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 142 RQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIK 201
+Q+QQ +I+ +FK D ++D + K E K + E + N L N++
Sbjct: 704 KQIQQYMKIISSFKNKEDQYDHLDAADMTKVE-KSTNEAMEWMNNKL----------NLQ 752
Query: 202 DLQKITRQPIVYLKEI---LKEV---CNYNLRNPHKNMWELKPEYRHYKQDVPVETKED 254
+ Q +T P+V KEI +KE+ C+ + P + K E ++ +Q+ PV+ + D
Sbjct: 753 NKQSLTMDPVVKSKEIEAKIKELTSTCSPIISKPKPKVEPPKEEQKNAEQNGPVDGQGD 811
>AB023420-1|BAA75062.1| 840|Homo sapiens apg-2 protein.
Length = 840
Score = 37.5 bits (83), Expect = 0.047
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 142 RQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIK 201
+Q+QQ +I+ +FK D ++D + K E K + E + N L N++
Sbjct: 704 KQIQQYMKIISSFKNKEDQYDHLDAADMTKVE-KSTNEAMEWMNNKL----------NLQ 752
Query: 202 DLQKITRQPIVYLKEI---LKEV---CNYNLRNPHKNMWELKPEYRHYKQDVPVETKED 254
+ Q +T P+V KEI +KE+ C+ + P + K E ++ +Q+ PV+ + D
Sbjct: 753 NKQSLTMDPVVKSKEIEAKIKELTSTCSPIISKPKPKVEPPKEEQKNAEQNGPVDGQGD 811
>DQ090887-1|AAY99645.1| 1196|Homo sapiens AHI1 protein.
Length = 1196
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>BC094800-1|AAH94800.1| 609|Homo sapiens AHI1 protein protein.
Length = 609
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>BC065712-1|AAH65712.1| 590|Homo sapiens AHI1 protein protein.
Length = 590
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>BC029417-1|AAH29417.1| 310|Homo sapiens AHI1 protein protein.
Length = 310
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AL133544-3|CAI22523.1| 1168|Homo sapiens protein ( Human DNA
sequence from clone RP1-71N10 on chromosome 6. ).
Length = 1168
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AL049552-2|CAI20387.1| 1168|Homo sapiens protein ( EB-RP (G13), the
gene for ).).
Length = 1168
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AL023693-5|CAI20201.1| 1168|Homo sapiens protein ( Human DNA
sequence from clone RP1-32B1 on chromosome 6q22.33-23.3.
).
Length = 1168
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AK092262-1|BAC03840.1| 1196|Homo sapiens protein ( Homo sapiens
cDNA FLJ34943 fis, clone NT2RP7007580. ).
Length = 1196
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AJ606362-1|CAE54481.1| 1196|Homo sapiens AHI1 protein protein.
Length = 1196
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AJ459825-1|CAD30872.1| 1053|Homo sapiens AHI1 protein protein.
Length = 1053
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>AJ459824-1|CAD30871.1| 1196|Homo sapiens AHI1 protein protein.
Length = 1196
Score = 33.5 bits (73), Expect = 0.76
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 76 DVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDDV--TYYKLKSES 133
DVS NT +L + + + TEN + + + + +PN V T +L ++
Sbjct: 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQD 140
Query: 134 IKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA-EGKKARDDKEAVLNMLFAAF 192
+K + P+ +V + KP P +D+Q+ +KA EG++ D +E L A+
Sbjct: 141 LKPET-PENKVDSTHQKTHT-KP---QP-GVDHQKSEKANEGREETDLEED--EELMQAY 192
Query: 193 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQDVPVETK 252
+ H +++ K ++ I ++ LKE Y + + +L E R K++VPV +K
Sbjct: 193 QCHV---TEEMAKEIKRKI---RKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKEVPVFSK 246
Query: 253 EDKNS 257
+ ++
Sbjct: 247 AETST 251
>BC113114-1|AAI13115.1| 1354|Homo sapiens Rho-associated, coiled-coil
containing protein kinase 1 protein.
Length = 1354
Score = 31.5 bits (68), Expect = 3.1
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 126 YYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSD---------HPHNIDYQERKKAEGKK 176
Y++L ES K AS ++++ D V + + N + ER K ++
Sbjct: 913 YFELTQESKKAASRNRQEITDKDHTVSRLEEANSMLTKDIEILRRENEELTERMKKAEEE 972
Query: 177 ARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWEL 236
+ +KE ++ L AAFEK NI + + Q + L EI+ ++ + N +L
Sbjct: 973 YKLEKEEEISNLKAAFEK----NINTERTLKTQAVNKLAEIMNRK-DFKIDRKKANTQDL 1027
Query: 237 -KPEYRHYKQDVPVETKEDK 255
K E + K + + + +K
Sbjct: 1028 RKKEKENRKLQLELNQEREK 1047
>L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein
protein.
Length = 1493
Score = 31.1 bits (67), Expect = 4.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 205 KITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEY 240
K++ +E+L+ +C ++ + + +W+LKPEY
Sbjct: 1457 KLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492
>BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 31.1 bits (67), Expect = 4.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 205 KITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEY 240
K++ +E+L+ +C ++ + + +W+LKPEY
Sbjct: 1457 KLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492
>AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 31.1 bits (67), Expect = 4.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 205 KITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEY 240
K++ +E+L+ +C ++ + + +W+LKPEY
Sbjct: 1457 KLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492
>AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair
cross-complementing rodent repairnt regulator of
chromatin, sub protein.
Length = 1493
Score = 31.1 bits (67), Expect = 4.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 205 KITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEY 240
K++ +E+L+ +C ++ + + +W+LKPEY
Sbjct: 1457 KLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492
>AB209504-1|BAD92741.1| 870|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 870
Score = 31.1 bits (67), Expect = 4.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 205 KITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEY 240
K++ +E+L+ +C ++ + + +W+LKPEY
Sbjct: 834 KLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 869
>AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein.
Length = 1028
Score = 30.7 bits (66), Expect = 5.4
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 17 KVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSIPKEHKLD 76
K P + EK N+E+ K ++ ++ R + + + + P S + +D
Sbjct: 187 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGR-LSRFEPPQSDSDGQRRSMD 245
Query: 77 VSNVNTQSLGVFSHIAPTNTDSVVPETENLYM 108
+ +S GV AP + D P T NLY+
Sbjct: 246 APSRRNRSSGVLDDYAPGSHDVGDPSTTNLYL 277
>U43195-1|AAB02814.1| 1354|Homo sapiens Rho-associated, coiled-coil
containing protein kinase p160ROCK protein.
Length = 1354
Score = 30.3 bits (65), Expect = 7.1
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 126 YYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSD---------HPHNIDYQERKKAEGKK 176
Y++L ES K AS ++++ D V + + N + E+ K ++
Sbjct: 913 YFELTQESKKAASRNRQEITDKDHTVSRLEEANSMLTKDIEILRRENEELTEKMKKAEEE 972
Query: 177 ARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWEL 236
+ +KE ++ L AAFEK NI + + Q + L EI+ ++ + N +L
Sbjct: 973 YKLEKEEEISNLKAAFEK----NINTERTLKTQAVNKLAEIMNRK-DFKIDRKKANTQDL 1027
Query: 237 -KPEYRHYKQDVPVETKEDK 255
K E + K + + + +K
Sbjct: 1028 RKKEKENRKLQLELNQEREK 1047
>M20020-1|AAA60288.1| 249|Homo sapiens RPS6 protein.
Length = 249
Score = 29.9 bits (64), Expect = 9.4
Identities = 23/104 (22%), Positives = 41/104 (39%)
Query: 93 PTNTDSVVPETENLYMEGRIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ 152
P TD+ VP RI ++ DDV Y ++ K+ P+ + ++ R+V
Sbjct: 122 PGLTDTTVPRRLGPKRASRIRKRFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVT 181
Query: 153 NFKPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQ 196
Q+R K ++A + + + + A EK Q
Sbjct: 182 PRVLQHKRRRIALKQQRTKKNKEEAAEYAKLLAKRMKEAKEKRQ 225
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.312 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,120,009
Number of Sequences: 224733
Number of extensions: 1581561
Number of successful extensions: 6082
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6049
Number of HSP's gapped (non-prelim): 30
length of query: 262
length of database: 73,234,838
effective HSP length: 89
effective length of query: 173
effective length of database: 53,233,601
effective search space: 9209412973
effective search space used: 9209412973
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -