GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003166-TA|BGIBMGA003166-PA|IPR003196|Transcription
initiation factor IIF, beta subunit, IPR011039|Transcription Factor
IIF, Rap30/Rap74, interaction
         (262 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/33 (21%), Positives = 22/33 (66%)

Query: 211 IVYLKEILKEVCNYNLRNPHKNMWELKPEYRHY 243
           I+Y   + +   +Y+LR+   N++++K +++++
Sbjct: 9   ILYFSIVCQAKAHYSLRDFKANIFQVKYQWKYF 41


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 230 HKNMWELKPEYRHYKQDVPVETKEDKNSNSDTE 262
           H +  E KPE   YK DV  +  +    +  TE
Sbjct: 166 HMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTE 198


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 220 EVCNYNLRNPHKNMWELKPE 239
           E  +YN+  P K++ E KPE
Sbjct: 100 EAVSYNVAVPTKSILEKKPE 119


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 196 QYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQ 245
           +Y   +  +K+  +    L+E      N   R   +N ++ + EYR Y++
Sbjct: 11  EYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 196 QYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKNMWELKPEYRHYKQ 245
           +Y   +  +K+  +    L+E      N   R   +N ++ + EYR Y++
Sbjct: 11  EYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 97  DSVVPETENLYMEGRIVQKLECRPNDDVT 125
           D+VVP +  L+  G   Q  E  P   VT
Sbjct: 20  DTVVPNSGELFKAGSAEQPKEQEPLPPVT 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,016
Number of Sequences: 429
Number of extensions: 3402
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 262
length of database: 140,377
effective HSP length: 57
effective length of query: 205
effective length of database: 115,924
effective search space: 23764420
effective search space used: 23764420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)