GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003165-TA|BGIBMGA003165-PA|undefined
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 215 VFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 255
           VFG  L +   +   R++MH     K Y P  +  S  +D+
Sbjct: 315 VFGALLEFALVNYASRSDMHSDNIEKKYPPSETEQSTSMDL 355


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 215 VFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 255
           VFG  L +   +   R++MH     K Y P  +  S  +D+
Sbjct: 315 VFGALLEFALVNYASRSDMHSDNIEKKYPPSETEQSTSMDL 355


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 14/16 (87%)

Query: 90  MSIIVTLGLMIGSGMV 105
           +++++TLG+ I SG++
Sbjct: 403 LALVITLGIAIVSGLI 418


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.141    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,348
Number of Sequences: 429
Number of extensions: 2457
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)