GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003164-TA|BGIBMGA003164-PA|IPR008962|PapD-like
         (1210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    26   1.6  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    26   1.6  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    26   1.6  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    26   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   8.6  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 89  SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 141


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 322 SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 374


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 382 TNNVSVDDSFNEYNAMNRNEL-PNIDQ-EKLPSKETLFSKNDDRQSVDTWFEV 432
           +NN + ++++N YN  N N+L  NI+  E++P    ++  N   + +  W  +
Sbjct: 322 SNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFPPRPMGPWISM 374


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 93  GNVKVNSTVVREILKKVKNFPEPSL 117
           G++KV ST V  ++  VK+F E SL
Sbjct: 818 GDIKVPSTKVLAMISSVKSFMELSL 842


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive opsin
            protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 979  GSATGMSLCLSQNSLQFGRVRKRGCKVLKVMLLNKGDFGARFWWQPLTSDEFTISPQKGN 1038
            GS +GM   ++  ++ F R R   C +   +   +      F W  +T   FT+ P    
Sbjct: 136  GSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVT--PFTVLPLLKV 193

Query: 1039 IAAHTNVTF--TITFRPLNHNPFIKVWASC 1066
               +T   F  T +F  L  +   KV+ +C
Sbjct: 194  WGRYTTEGFLTTCSFDFLTDDEDTKVFVTC 223


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
            protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 979  GSATGMSLCLSQNSLQFGRVRKRGCKVLKVMLLNKGDFGARFWWQPLTSDEFTISPQKGN 1038
            GS +GM   ++  ++ F R R   C +   +   +      F W  +T   FT+ P    
Sbjct: 136  GSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVT--PFTVLPLLKV 193

Query: 1039 IAAHTNVTF--TITFRPLNHNPFIKVWASC 1066
               +T   F  T +F  L  +   KV+ +C
Sbjct: 194  WGRYTTEGFLTTCSFDFLTDDEDTKVFVTC 223


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 900 PSRGKMLQDHKNDIVTNQIAMDIQNALSSLKVIPNKCKIMPHRKIPL----KIQFKPLGM 955
           PS G+ + D+K   +T    + +Q  +   K +P   ++M   +I L      +   L M
Sbjct: 364 PSEGEDISDYKFRHITEITILTVQLIVEFSKRLPGFDELMREDQIALLKACSSEVMMLRM 423

Query: 956 ISSLSVQLNMKVLEFEKPLVRLSGSATGM 984
                VQ +  +    +P  + S +  GM
Sbjct: 424 ARKYDVQTDSIIFANNQPYTKDSYTVAGM 452


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,190
Number of Sequences: 429
Number of extensions: 17595
Number of successful extensions: 37
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 17
length of query: 1210
length of database: 140,377
effective HSP length: 66
effective length of query: 1144
effective length of database: 112,063
effective search space: 128200072
effective search space used: 128200072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)