GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003162-TA|BGIBMGA003162-PA|undefined
         (443 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.32 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   5.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   5.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 252 VPKTLELDVINESVV-QVRASVKISSDGPEISSITLTDYAVASKPKPNVPQWPREFNIEP 310
           VP T   +V N S      +S + SS   E  S+        ++ +P    WP E+ + P
Sbjct: 530 VPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSINTVAEWEPPRALWPTEWKVRP 589

Query: 311 SNIDMGPESRITLRITLTA 329
           S ++   E R   R+   A
Sbjct: 590 STVEEREEFRRQERMRYAA 608


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 414 KECLIEPNSTICLPVTIK 431
           KEC + PNSTI + V ++
Sbjct: 91  KECELSPNSTIAVCVCMR 108


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 164 GVIEYKEIPPLFGSVINCIPKRHCLRAGDKETFIVSFCNSNQGPYF 209
           G++ +   P + G  +   P      A  K+T I+   N N+G YF
Sbjct: 341 GILGFPSAPTIDGIFLPKHPLDLLREADFKDTEILIGNNENEGTYF 386


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 164 GVIEYKEIPPLFGSVINCIPKRHCLRAGDKETFIVSFCNSNQGPYF 209
           G++ +   P + G  +   P      A  K+T I+   N N+G YF
Sbjct: 341 GILGFPSAPTIDGIFLPKHPLDLLREADFKDTEILIGNNENEGTYF 386


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,097
Number of Sequences: 429
Number of extensions: 5864
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 443
length of database: 140,377
effective HSP length: 60
effective length of query: 383
effective length of database: 114,637
effective search space: 43905971
effective search space used: 43905971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)