GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003159-TA|BGIBMGA003159-PA|IPR001841|Zinc finger,
RING-type
         (1134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   1.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   6.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   6.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 402 SVEKLNGTDLSTTTPTLRIGTSNEKLATSTKPETIQETKKEIQSLVIPTIRTIHQSELPC 461
           S E L+    + T+   R  TSN     S KP T+ E+     +  +  +  +   E   
Sbjct: 605 SAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLTESLLNRHNEDMEKLMMLKHREF-- 662

Query: 462 TSQKLLGDDLKQTNYVKNTENLAT 485
            S     D LK +  +K TE L+T
Sbjct: 663 RSSIKASDKLKDSR-IKTTEKLST 685


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 532 KELQNDKVTKSTQSERLLKTPNNAAKEDVKSALEQRSESVKVEGT---RNHLKISKETLI 588
           ++L N+K  +    ER  +   + ++E  + + +   E  K   T   R+  +  +ET  
Sbjct: 20  EKLHNEK--EKLLEERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77

Query: 589 EPKIFRNDMKNIEKGLHDSNKKNIQKTINEN 619
           EPKI  +   N +   +++   N     N N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 532 KELQNDKVTKSTQSERLLKTPNNAAKEDVKSALEQRSESVKVEGT---RNHLKISKETLI 588
           ++L N+K  +    ER  +   + ++E  + + +   E  K   T   R+  +  +ET  
Sbjct: 20  EKLHNEK--EKLLEERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77

Query: 589 EPKIFRNDMKNIEKGLHDSNKKNIQKTINEN 619
           EPKI  +   N +   +++   N     N N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNYNNNYNNN 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 377 MLKEMKDSLPKKMKYNHDNQLPNNV--SVEKLNGTDLSTTTPTLRIGTSNEKLATSTKPE 434
           M +E   SL     + H+   P     ++     T  +TTT T    T+    AT+  P+
Sbjct: 633 MERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692

Query: 435 TIQETKKEI 443
             +   KE+
Sbjct: 693 VDEVDDKEL 701


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 532 KELQNDKVTKSTQSERLLKTPNNAAKEDVKSALEQRSESVKVEGT---RNHLKISKETLI 588
           ++L N+K  +    ER  +   + ++E  +   + + E  K   T   R+  +  +E   
Sbjct: 20  EKLHNEK--EKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERERSK 77

Query: 589 EPKIFRNDMKNIEKGLHDSNKKNIQKTINENDKE 622
           EPKI  N+        +++N  N     N N K+
Sbjct: 78  EPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,866
Number of Sequences: 429
Number of extensions: 14456
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 5
length of query: 1134
length of database: 140,377
effective HSP length: 65
effective length of query: 1069
effective length of database: 112,492
effective search space: 120253948
effective search space used: 120253948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)