GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003157-TA|BGIBMGA003157-PA|IPR001202|WW/Rsp5/WWP
         (670 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   4.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   6.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   8.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 270 RNASPESRKVVKWNAEDTFQWLRRTVGATYDDFQDR--LAHLR-RQCQPHLAETVKA 323
           ++++ E+    + NA  T   +RR  GAT+++ Q++  +A++R RQ    L E   A
Sbjct: 219 KSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAA 275


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 517 SMVAHPPYCEELLEAALRHMERLLQDSAEPLSFVVVLPE 555
           S VA+  +CE  +    ++M  +L+D  E   F VV+ E
Sbjct: 156 SEVANEMFCETTIGCKDKNMAPILKDLMETSYFKVVVVE 194


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 529 LEAALRHMERLLQDSAEPL 547
           ++ ALRH+ R +QDS + L
Sbjct: 77  VQKALRHLPRSMQDSTKKL 95


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 93  VKRDFDPITDPLGICHTGPSNPGNMTPG 120
           +K D   + +P     +GP++PG+ T G
Sbjct: 50  MKPDTASLINPGNFSPSGPNSPGSFTAG 77


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 93  VKRDFDPITDPLGICHTGPSNPGNMTPG 120
           +K D   + +P     +GP++PG+ T G
Sbjct: 50  MKPDTASLINPGNFSPSGPNSPGSFTAG 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,829
Number of Sequences: 429
Number of extensions: 10973
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 670
length of database: 140,377
effective HSP length: 62
effective length of query: 608
effective length of database: 113,779
effective search space: 69177632
effective search space used: 69177632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)