GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003155-TA|BGIBMGA003155-PA|IPR000597|Ribosomal protein
L3, IPR009000|Translation factor
         (364 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.25 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   9.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.5  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   9.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 191 LCRFVVSPESALPNGTPLYATHFRVGDCIDGRSKTMDRG 229
           LC + +  +  +P GTP+Y  + R    ID  ++ + RG
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNCDIDCINRVVQRG 492


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 123 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 151
           T + V +N    Y+PP  +K   K ++ W
Sbjct: 126 TNVVVKNNGTCLYVPPGIFKSTCKIDITW 154


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 123 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 151
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 89  TSVVVTHNGSCLYVPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 123 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 151
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 123 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 151
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  YVPKERVWTDDYLTKEN 56
           YVP E +W  D +   N
Sbjct: 96  YVPSEHIWLPDIVLYNN 112


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  YVPKERVWTDDYLTKEN 56
           YVP E +W  D +   N
Sbjct: 109 YVPSENIWLPDIVLYNN 125


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 70  AQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVD 129
           + T++    +   ++NDVK  +T     K+    A  IG  P+     K  + +LLQ   
Sbjct: 862 SSTSINSITVEKDVINDVKTQITTNTPAKK----ATNIGGKPVAVV--KSSAQSLLQSNQ 915

Query: 130 NH 131
            H
Sbjct: 916 QH 917


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 37  PYWYVPKERVWTDDYLTK 54
           P   + + R+W DD LTK
Sbjct: 104 PLEKLKERRIWRDDALTK 121


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,704
Number of Sequences: 429
Number of extensions: 6097
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 10
length of query: 364
length of database: 140,377
effective HSP length: 59
effective length of query: 305
effective length of database: 115,066
effective search space: 35095130
effective search space used: 35095130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)