GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003153-TA|BGIBMGA003153-PA|IPR001623|Heat shock protein
DnaJ, N-terminal, IPR002939|Chaperone DnaJ, C-terminal,
IPR008971|HSP40/DnaJ peptide-binding, IPR003095|Heat shock protein
DnaJ
         (336 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 190 VCDECPNVKFVNEE 203
           VCD+C   ++V++E
Sbjct: 469 VCDQCEEYEYVHDE 482


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 309 NNNLHGNLYVTFDIEFPKQDFTDAEKE 335
           N     NLY+ F +    +DF D   E
Sbjct: 253 NKEARSNLYLPFHLTLSFRDFRDRTTE 279


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 309 NNNLHGNLYVTFDIEFPKQDFTDAEKE 335
           N     NLY+ F +    +DF D   E
Sbjct: 248 NKEARSNLYLPFHLTLSFRDFRDRTTE 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,665
Number of Sequences: 429
Number of extensions: 4112
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 336
length of database: 140,377
effective HSP length: 58
effective length of query: 278
effective length of database: 115,495
effective search space: 32107610
effective search space used: 32107610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)