GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003151-TA|BGIBMGA003151-PA|IPR001631|DNA topoisomerase
I, C-terminal, IPR008336|DNA topoisomerase I, DNA binding,
eukaryotic-type, IPR013500|DNA topoisomerase I, catalytic core,
eukaryotic-type, IPR011010|DNA breaking-rejoining enzyme, catalytic
core, IPR013499|DNA topoisomerase I, C-terminal, eukaryotic-type
         (686 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.17 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   4.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   6.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 490 LNTQTLNEHLKDLMPGLTAKVFRTYNASITLQKQLDELTDGDASVPEKILAYNRANRAVA 549
           L    + E   D + GLT  V RT+NAS      LD       S+PE + A  R  R + 
Sbjct: 244 LQRNAIVEIAGDALTGLT--VLRTFNASYN---SLD-------SLPEGLFASTRDLREIH 291

Query: 550 ILCNHQRAVPKGHSKSMEAL 569
           +  N  R +PKG    +E L
Sbjct: 292 LAYNGLRDLPKGIFTRLEQL 311


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 491 NTQTLNEHLKDLMPGLTAKVFR 512
           N   L++HL  L PG+ A  FR
Sbjct: 100 NLDALHDHLGTLYPGMRAPSFR 121


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 491 NTQTLNEHLKDLMPGLTAKVFR 512
           N   L++HL  L PG+ A  FR
Sbjct: 100 NLDALHDHLGTLYPGMRAPSFR 121


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 471 KNLEIFIENKKDSDDLFDRLNTQTLN---EHLKDLMPGLTAK 509
           KN  I  +N   +DD F RL++ TLN   + + D    LT K
Sbjct: 208 KNTLIIYQN---ADDSFHRLSSHTLNHNSDKMSDQQENLTLK 246


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 170 GISPNKRKKKQDTETEQVWKWWEE 193
           G+ PN   KKQ+       K+W E
Sbjct: 85  GVGPNGLTKKQEMLVRSAIKYWVE 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,166
Number of Sequences: 429
Number of extensions: 7087
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 686
length of database: 140,377
effective HSP length: 62
effective length of query: 624
effective length of database: 113,779
effective search space: 70998096
effective search space used: 70998096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)