GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003149-TA|BGIBMGA003149-PA|undefined
         (63 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB011128-1|BAA25482.2| 1625|Homo sapiens KIAA0556 protein protein.     33   0.18 
BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...    27   9.1  
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.       27   9.1  

>AB011128-1|BAA25482.2| 1625|Homo sapiens KIAA0556 protein protein.
          Length = 1625

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 9   KRVRIPRPKFGNKYPVEPPKDYLENSDLSGKTRRHDNKDFVKATEELRRTLQ 60
           K V+I R + G +  +EPP DY ++ +L G      N       +ELRR+L+
Sbjct: 144 KSVQI-RTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQELRRSLE 194


>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29  DYLENSDLSGKTRRHDNKDFVKATEELR-RTLQEK 62
           DY+  S + G   R + KDF KA  ++R +TL +K
Sbjct: 133 DYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29  DYLENSDLSGKTRRHDNKDFVKATEELR-RTLQEK 62
           DY+  S + G   R + KDF KA  ++R +TL +K
Sbjct: 133 DYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,603,099
Number of Sequences: 224733
Number of extensions: 360195
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 3
length of query: 63
length of database: 73,234,838
effective HSP length: 43
effective length of query: 20
effective length of database: 63,571,319
effective search space: 1271426380
effective search space used: 1271426380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)