GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003149-TA|BGIBMGA003149-PA|undefined
         (63 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   2.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   8.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    18   8.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 19  GNKYPVEPPKDYLENSDLSGKTR 41
           G + P+E P+DY   SDL  + R
Sbjct: 174 GARVPIEIPRDYTA-SDLDVEHR 195


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 5  LDDIKRVRIPRPKFGNKYPVEPPKDYLENSDLSGKTRRHDNKDFVKATEELRRTLQEKL 63
          +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  ++E++
Sbjct: 13 VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALMKERI 71


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 5  LDDIKRVRIPRPKFGNKYPVEPPKDYLENSDLSGKTRRHDNKDFVKATEELRRTLQEKL 63
          +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  ++E++
Sbjct: 13 VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALMKERI 71


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 5  LDDIKRVRIPRPKFGNKYPVEPPKDYLENSDLSGKTRRHDNKDFVKATEELRRTLQEKL 63
          +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  ++E++
Sbjct: 13 VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALMKERI 71


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 4/14 (28%), Positives = 11/14 (78%)

Query: 20  NKYPVEPPKDYLEN 33
           ++YP+ PP++ + +
Sbjct: 121 SRYPLRPPQEVISH 134


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 26   PPKDYLENSDLSGKTRRHD 44
            PP      +    KTRR+D
Sbjct: 1231 PPNQLTHEASELDKTRRYD 1249


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 42  RHDNKDFVKATEELRRTLQEK 62
           +H+ + F +   E    LQEK
Sbjct: 389 KHNTQQFTQYIPESSSNLQEK 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,767
Number of Sequences: 429
Number of extensions: 915
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 63
length of database: 140,377
effective HSP length: 43
effective length of query: 20
effective length of database: 121,930
effective search space:  2438600
effective search space used:  2438600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)