GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003144-TA|BGIBMGA003144-PA|undefined
         (1322 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   1.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   7.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 284 LNGSLVRGVSFHRGSRRGARDKWM--NATK 311
           L GS+ R +S  R +RRGA D  +  NATK
Sbjct: 10  LLGSIARSLSLDRRARRGAADLSLAGNATK 39


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
            protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 1067 MTGTNRVNLFSMGYLIGSFIFLWQGTDF 1094
            M  T+ V + SM Y +G+F FL+    F
Sbjct: 184  MAATSNVIIASMQYRVGAFGFLYLNKHF 211


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
            protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 1067 MTGTNRVNLFSMGYLIGSFIFLWQGTDF 1094
            M  T+ V + SM Y +G+F FL+    F
Sbjct: 184  MAATSNVIIASMQYRVGAFGFLYLNKHF 211


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,725
Number of Sequences: 429
Number of extensions: 13562
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 3
length of query: 1322
length of database: 140,377
effective HSP length: 66
effective length of query: 1256
effective length of database: 112,063
effective search space: 140751128
effective search space used: 140751128
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 49 (23.8 bits)