GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003143-TA|BGIBMGA003143-PA|undefined
         (551 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.075
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.93 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        25   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   8.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   8.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   8.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   8.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 29.5 bits (63), Expect = 0.075
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 89  LKLNFSDLELRSLEISGDTSMTTNIPELKTDNDEEDDSDSIPLDSVKSHTPPIKL 143
           +K    D+E   ++    T M  +IP  +T+ +EE+D   + LDS+     PI+L
Sbjct: 292 IKKEVEDMEYDDIKTELSTGMNDDIPP-ETEEEEENDK-KLDLDSIDMMQLPIQL 344


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.93
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 110 TTNIPELKTDNDEEDDSDSIPLDSVKSHTPPIKLKKRRSTSKM 152
           T NIP +K D D++   +SI   SV S + P    +R + +++
Sbjct: 389 TLNIPSVKIDEDQKCSIESI--TSVNSTSSPKPFPRRATLAQL 429


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 458 KAKRRYLQYPDGFMAHFYSISEHLLPVLVWGF 489
           +AKRR+ +Y   FM      ++ + P   WG+
Sbjct: 184 EAKRRFEKYGQLFMEETLKAAKRMRPAANWGY 215


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 104 SGDTSMTTNIPELKTDNDEEDDSDSIPL 131
           SG+   ++++ E +T +DEE ++D+ PL
Sbjct: 305 SGECYFSSDLSESETSSDEE-EADTRPL 331


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
          determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 34 VLSHQETRQKWSFLTKRLNALQGGALKSADGWRKYWVEWRHKCRKKARRK 83
          +L  + +R+++S   +R    +  + K+ + +RKY   W+ + R +  R+
Sbjct: 29 LLEERTSRKRYSRSRER----EQKSYKNENSYRKYRETWKERSRDRTERE 74


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 34 VLSHQETRQKWSFLTKRLNALQGGALKSADGWRKYWVEWRHKCRKKARRK 83
          +L  + +R+++S   +R    +  + K+ + +RKY   W+ + R +  R+
Sbjct: 29 LLEERTSRKRYSRSRER----EQKSYKNENSYRKYRETWKERSRDRTERE 74


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 34 VLSHQETRQKWSFLTKRLNALQGGALKSADGWRKYWVEWRHKCRKKARRK 83
          +L  + +R+++S   +R    +  + K+ + +RKY   W+ + R +  R+
Sbjct: 29 LLEERTSRKRYSRSRER----EQKSYKNENSYRKYRETWKERSRDRTERE 74


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 34 VLSHQETRQKWSFLTKRLNALQGGALKSADGWRKYWVEWRHKCRKKARRK 83
          +L  + +R+++S   +R    +  + K+ + +RKY   W+ + R +  R+
Sbjct: 29 LLEERTSRKRYSRSRER----EQKSYKNENSYRKYRETWKERSRDRTERE 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,739
Number of Sequences: 429
Number of extensions: 6185
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 8
length of query: 551
length of database: 140,377
effective HSP length: 61
effective length of query: 490
effective length of database: 114,208
effective search space: 55961920
effective search space used: 55961920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)