GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003142-TA|BGIBMGA003142-PA|IPR008940|Protein
prenyltransferase, IPR003107|RNA-processing protein, HAT helix
         (511 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.65 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   8.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.65
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 100 NFQSKHGK-SNHQLWN-ELCELISKNPDQIHSLNVDAI 135
           NF   H    N  LW+ + C  IS N  ++HS N++A+
Sbjct: 102 NFYFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAV 139


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 156 DYYVRSGLFERARD----IYEEAIQTVTTVRDFT 185
           D Y+ SG+F RAR+    + E A   +   RD+T
Sbjct: 153 DKYMDSGIFSRAREEANVVPEGARVPIEIPRDYT 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,668
Number of Sequences: 429
Number of extensions: 4852
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 511
length of database: 140,377
effective HSP length: 61
effective length of query: 450
effective length of database: 114,208
effective search space: 51393600
effective search space used: 51393600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)