GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003138-TA|BGIBMGA003138-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (506 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    36   8e-04
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   2.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 35.9 bits (79), Expect = 8e-04
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 242 GSMTSLARFRAPSPERVIAPAESKSILSEMLDFSLLVDPIFILFAISNFLTS-IGFYIPY 300
           G +  L  F    P+R+   ++   IL  ++    +    F+  A  + +   IG +I  
Sbjct: 268 GGLVGLG-FSLNGPDRIDILSQINGILGSLV---AITGGCFLFRAWESIIVGMIGAFIT- 322

Query: 301 VYTVPMSKSMGIENPAFLISIIGASNLIGRIILGFISDKPWVNRLMAYNLSLTIAGIS-- 358
            +T+P+   M I++P    +  GAS + G I +G  +D P+          L   G    
Sbjct: 323 CFTMPLLDKMHIDDPVGASATHGASGIWGIIAIGLFADNPYPLNTTNGRKGLLKGGGGYL 382

Query: 359 ---TAMAMICWEFWGLALYATVFGFTIGAYVGLTSVVLVDLLGLE 400
                + ++C  FW   + +T+  + I   + +   +  +LLG +
Sbjct: 383 LGIQCLTVVCLAFWSF-IVSTILLWFINKIIPIRMSIHDELLGAD 426


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 449 EDTFMHRVYEAEITGKNHTFYVNE-NEIIKY 478
           ED     VYE  I GK  T  +NE +E +KY
Sbjct: 34  EDRVTMYVYEEIINGKKLTEIINETHENVKY 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,038
Number of Sequences: 429
Number of extensions: 5266
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 506
length of database: 140,377
effective HSP length: 61
effective length of query: 445
effective length of database: 114,208
effective search space: 50822560
effective search space used: 50822560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)