GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003136-TA|BGIBMGA003136-PA|undefined
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 27  YISGILEGEDTVDEKRDALEDILSEIVKKDISIHVQEILEK 67
           Y+  +LE    VD++ +  EDI+  ++   +    Q ++ K
Sbjct: 73  YMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGK 113


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 27  YISGILEGEDTVDEKRDALEDILSEIVKKDISIHVQEILEK 67
           Y+  +LE    VD++ +  EDI+  ++   +    Q ++ K
Sbjct: 73  YMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGK 113


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 10 LIDKLRSLKTDESVFGSYISGILEGEDTVDE 40
          L DK+R  K D      Y    + G D++DE
Sbjct: 47 LYDKMRPPKKDGQATVVYFHVTVMGLDSIDE 77


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 24  FGSYISGILEGEDTVDEKRDALEDILSEIVKKDISI 59
           F  Y+SG L   +T    +  L D L    K D+S+
Sbjct: 381 FQKYMSGTLNSNETNFRIQAGLVDELVRGTKCDVSL 416


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 63  EILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTD 107
           E ++ +E  Q  K+   PAT   SK + +   +        EY D
Sbjct: 259 EPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDD 303


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,768
Number of Sequences: 429
Number of extensions: 1366
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)