GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003134-TA|BGIBMGA003134-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (193 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      43   2e-06
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query: 70  NESKSKHKMRQ--GKTV------RLNINARERRRMHDLNDALDELRGVIPYAHSPSVRKL 121
           N S +K KMR+  G T       R+  N RER+R   LN+A   LR +IP   S    KL
Sbjct: 232 NASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD---KL 288

Query: 122 SKIATLLLAKNYI 134
           SKI TL LA  YI
Sbjct: 289 SKIQTLKLATRYI 301


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 2   EGRRNWDGVPLGE 14
           EG + WDGV +G+
Sbjct: 416 EGIQTWDGVLMGQ 428


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 73  KSKHKMRQGKTVRLNINARERRRMHDLND 101
           K +  + + KT+R +I A+ R + + LND
Sbjct: 867 KWRGAIEKRKTLRASIAAQRRIQSNGLND 895


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,316
Number of Sequences: 429
Number of extensions: 2690
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 140,377
effective HSP length: 54
effective length of query: 139
effective length of database: 117,211
effective search space: 16292329
effective search space used: 16292329
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)