GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003131-TA|BGIBMGA003131-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal, IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport
         (155 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    20   9.9  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 72 FNMLFAIFKPFIREKLRGR 90
          ++ LFA F P+IR+ +  R
Sbjct: 22 YSQLFAGFGPYIRQAVAMR 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,323
Number of Sequences: 429
Number of extensions: 1761
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 155
length of database: 140,377
effective HSP length: 53
effective length of query: 102
effective length of database: 117,640
effective search space: 11999280
effective search space used: 11999280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)