GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003129-TA|BGIBMGA003129-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal, IPR001071|Cellular
retinaldehyde binding/alpha-tocopherol transport
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.8  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 27  FLDHKVVNVMKGRDNKGRRVLIVSVGGSWDPKKVNADQLFRLFYLIHLAAILEPESQVKG 86
           F  H +++V+ G   K R++ + S   S     ++A QL+      + ++I+     ++G
Sbjct: 233 FTKH-MLDVVSGTQKKKRKIYLFSGHESNIASVLHALQLYYPHVPEYSSSIIMELHNIEG 291

Query: 87  TVVIMDFYNMG 97
           T  +   Y +G
Sbjct: 292 THYVKIVYYLG 302


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 27  FLDHKVVNVMKGRDNKGRRVLIVSVGGSWDPKKVNADQLFRLFYLIHLAAILEPESQVKG 86
           F  H +++V+ G   K R++ + S   S     ++A QL+      + ++I+     ++G
Sbjct: 248 FTKH-MLDVVSGTQKKKRKIYLFSGHESNIASVLHALQLYYPHVPEYSSSIIMELHNIEG 306

Query: 87  TVVIMDFYNMG 97
           T  +   Y +G
Sbjct: 307 THYVKIVYYLG 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,628
Number of Sequences: 429
Number of extensions: 2854
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)