GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003123-TA|BGIBMGA003123-PA|IPR009602|Protein of unknown
function DUF1208
         (276 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.97 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.97 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.97 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.97 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   6.9  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.1  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 106 QYDTICKHAREEVKHAMNVRDKELARKKVLDKARERQPFNRQQVTYAESEFMKTSAEMSR 165
           QY+ +C    + ++   + +    +R++  +  +  + + + + T  E    +T  E SR
Sbjct: 18  QYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 77

Query: 166 SAKSLS 171
             K +S
Sbjct: 78  EPKIIS 83


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 106 QYDTICKHAREEVKHAMNVRDKELARKKVLDKARERQPFNRQQVTYAESEFMKTSAEMSR 165
           QY+ +C    + ++   + +    +R++  +  +  + + + + T  E    +T  E SR
Sbjct: 18  QYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 77

Query: 166 SAKSLS 171
             K +S
Sbjct: 78  EPKIIS 83


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 106 QYDTICKHAREEVKHAMNVRDKELARKKVLDKARERQPFNRQQVTYAESEFMKTSAEMSR 165
           QY+ +C    + ++   + +    +R++  +  +  + + + + T  E    +T  E SR
Sbjct: 18  QYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 77

Query: 166 SAKSLS 171
             K +S
Sbjct: 78  EPKIIS 83


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 106 QYDTICKHAREEVKHAMNVRDKELARKKVLDKARERQPFNRQQVTYAESEFMKTSAEMSR 165
           QY+ +C    + ++   + +    +R++  +  +  + + + + T  E    +T  E SR
Sbjct: 18  QYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 77

Query: 166 SAKSLS 171
             K +S
Sbjct: 78  EPKIIS 83


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 38 GNYTRKTARLRDMGDELTKVLKSYANNEIVNKSLSTGLDNLSVTLTALE 86
          GN   K+       +ELTK+++ +   +I+  S  T   N  + L+  +
Sbjct: 27 GNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD 75


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 24 TSVEKNFGELCVAFGNYTRKTARLRD 49
          T   +++ +L   FG Y R+   +RD
Sbjct: 16 TVSSQDYSQLFAGFGPYIRQAVAMRD 41


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 5   DSSHSLSYEQQAKFINDRITSVEKNFGELCVAFGNYTRKTARLRDMGD 52
           +S +   YE    F  + + +   N  E C+    +  +  RLR  GD
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGD 144


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 5   DSSHSLSYEQQAKFINDRITSVEKNFGELCVAFGNYTRKTARLRDMGD 52
           +S +   YE    F  + + +   N  E C+    +  +  RLR  GD
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGD 144


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,536
Number of Sequences: 429
Number of extensions: 2092
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 8
length of query: 276
length of database: 140,377
effective HSP length: 57
effective length of query: 219
effective length of database: 115,924
effective search space: 25387356
effective search space used: 25387356
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)