Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003122-TA|BGIBMGA003122-PA|IPR001611|Leucine-rich
repeat, IPR008957|Fibronectin, type III-like fold,
IPR003591|Leucine-rich repeat, typical subtype
(842 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 76 1e-15
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 1.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 1.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 24 4.5
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 75.8 bits (178), Expect = 1e-15
Identities = 72/260 (27%), Positives = 108/260 (41%), Gaps = 10/260 (3%)
Query: 61 IDLLYVNNSSIPSLTDNMFVNLKIHNLQISGCKIRKIDDDTFRTQGPYLKNLNLQDNELT 120
I L Y +P L + NL + ++D+ TF + LNL N LT
Sbjct: 290 IHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIV-LNLSYNMLT 348
Query: 121 QVPVKALKVLTSLSLLDISKNRITYIENHSFITLRKLTTLKVSDNNV-TLATHAFTGLEA 179
+ + K L L +LD+ N I IE+++F+ L L TL++SDN + T+ F GL
Sbjct: 349 HIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFV 408
Query: 180 SLKNLNLKGTK-QKLVPNCIRGLRSLAFLDLSQNSIRELPNADGSQTFEGLDSLTALNLE 238
L L L G + P R L LDLS N + +P+A L L L+L
Sbjct: 409 -LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDA-----LRDLALLKTLDLG 462
Query: 239 RNLIVNLGEDAFVGIKXXXXXXXXXXXXIPEFPTAAIGSLTELRVLDIGFNLLNKLPADA 298
N I N +F + I + L L++L++ N + + A
Sbjct: 463 ENRISNFYNGSFRNL-DQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYA 521
Query: 299 FLNNPAITLLALDGNPLPTV 318
F N + + LDGN L +
Sbjct: 522 FERNMRLEAIRLDGNFLSDI 541
Score = 57.6 bits (133), Expect = 4e-10
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 11/199 (5%)
Query: 133 LSLLDISKNRITYI-ENHSFITLRKLTTLKVSDNNVT-LATHAFTGLEASLKNLNLKGTK 190
+ +LD+S+N IT + EN + LR+L L + N + +A A TGL L+ N
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTV-LRTFNASYNS 272
Query: 191 QKLVPNCI-RGLRSLAFLDLSQNSIRELPNADGSQTFEGLDSLTALNLERNLIVN--LGE 247
+P + R L + L+ N +R+LP F L+ L LNL N + + + E
Sbjct: 273 LDSLPEGLFASTRDLREIHLAYNGLRDLPKG----IFTRLEQLLVLNLAGNRLGSDRVDE 328
Query: 248 DAFVGIKXXXXXXXXXXXXIPEFPTAAIGSLTELRVLDIGFNLLNKLPADAFLNNPAITL 307
F+G+ + L L++LD+ N ++++ ++AFL +
Sbjct: 329 TTFLGL-IRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHT 387
Query: 308 LALDGNPLPTVPEKAFTHL 326
L L N L TV + F L
Sbjct: 388 LELSDNKLRTVGAQLFNGL 406
Score = 56.0 bits (129), Expect = 1e-09
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 20/272 (7%)
Query: 84 IHNLQISGCKIRKIDDDTFRTQGPYLKNLNLQD-------NELTQVPVKALKVLTSLSLL 136
+H L + GCK+ +I + F+ LK L +Q + ++ + L L L
Sbjct: 94 LHELHVHGCKVLRIPEGAFQPL-LELKKLTVQTFNSVWGASRFLELAPDSFLGLRELHTL 152
Query: 137 DISKNRITYIENHSFITLRKLTTLKVSDNNVTLATHAFTGLEASLKNLNLKGTKQKLVPN 196
+I ++ + + +S +L L TL +++N L GL + G +
Sbjct: 153 EIVESNVQALPVNSLCSLDNLQTLNLTENR--LRDINDIGLNRRDSDDGSDGNDGD-ESS 209
Query: 197 CIRGLRSLAFLDLSQNSIRELPNADGSQTFEGLDSLTALNLERNLIVNLGEDAFVGIKXX 256
C +R LDLS+N I L + S + L L L+L+RN IV + DA G+
Sbjct: 210 CRADIR---ILDLSRNEITRL--QENSPLLD-LRQLQELHLQRNAIVEIAGDALTGL-TV 262
Query: 257 XXXXXXXXXXIPEFPTAAIGSLTELRVLDIGFNLLNKLPADAFLNNPAITLLALDGNPLP 316
+ P S +LR + + +N L LP F + +L L GN L
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLG 322
Query: 317 T--VPEKAFTHLNQXXXXXXXXXXFLNCDCRL 346
+ V E F L + + D R+
Sbjct: 323 SDRVDETTFLGLIRLIVLNLSYNMLTHIDARM 354
Score = 51.6 bits (118), Expect = 3e-08
Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 10/241 (4%)
Query: 84 IHNLQISGCKIRKIDDDTFRTQGPYLKNLNLQDNELTQVPVKALKVLTSLSLLDISKNRI 143
I L +S +I ++ +++ L+ L+LQ N + ++ AL LT L + S N +
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273
Query: 144 TYIENHSFITLRKLTTLKVSDNNVT-LATHAFTGLEASLKNLNLKGTK---QKLVPNCIR 199
+ F + R L + ++ N + L FT LE L LNL G + ++
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLV-LNLAGNRLGSDRVDETTFL 332
Query: 200 GLRSLAFLDLSQNSIRELPNADGSQTFEGLDSLTALNLERNLIVNLGEDAFVGIKXXXXX 259
GL L L+LS N + + ++ F+ L L L+L N I + +AF+ +
Sbjct: 333 GLIRLIVLNLSYNMLTHID----ARMFKDLFFLQILDLRNNSIDRIESNAFLPL-YNLHT 387
Query: 260 XXXXXXXIPEFPTAAIGSLTELRVLDIGFNLLNKLPADAFLNNPAITLLALDGNPLPTVP 319
+ L L L + N + + AF N + L L GN L +VP
Sbjct: 388 LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 447
Query: 320 E 320
+
Sbjct: 448 D 448
Score = 39.1 bits (87), Expect = 1e-04
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 46 SALMSALNLSVKNTA-IDLLYVNNSSIPSLTDNMFVNLKIHNLQISGCKIRKIDDDTFRT 104
+A+ S L+ +N + + L ++ + + S+ D + + L + +I + +FR
Sbjct: 417 NAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRN 476
Query: 105 QGPYLKNLNLQDNELTQVPVKALKVLTSLSLLDISKNRITYIENHSFITLRKLTTLKVSD 164
L L L N++ + L L +L +L++++N++ ++E ++F +L +++
Sbjct: 477 LDQ-LTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDG 535
Query: 165 NNVTLATHAFTGLEASLKNLNLKGTKQKLVPNC-IRGLRSLAFLDLSQNSIRELPN 219
N ++ FT + ASL LNL + I G +L +LD+ N I L N
Sbjct: 536 NFLSDINGVFTSI-ASLLLLNLSENHIEWFDYAFIPG--NLKWLDIHGNFIESLGN 588
Score = 34.7 bits (76), Expect = 0.003
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 63 LLYVNNSSIPSLTDNMFVNLK-IHNLQISGCKIRKIDDDTFRTQGPYLKNLNLQDNELTQ 121
+LYVN S I S+ + F L + L + +IR++ F +L+ L LQ+N +
Sbjct: 822 VLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLS-HLRELYLQNNLIGF 880
Query: 122 VPVKALKVLTSLSLLDISKNRITYIENHSFITLRKLTTLKVSDN 165
+ L SL +L +S NR+ +L L + N
Sbjct: 881 IGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSN 924
Score = 30.7 bits (66), Expect = 0.051
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 10/187 (5%)
Query: 209 LSQNSIRELPNADGSQTFEGLDSLTALNLERNLIVNLGEDAFVGIKXXXXXXXXXXXXIP 268
L N +REL N F G ++ L + + I ++ F G+ I
Sbjct: 801 LDGNVLRELQN----HVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNR-IR 855
Query: 269 EFPTAAIGSLTELRVLDIGFNLLNKLPADAFLNNPAITLLALDGNPLPTVPEKAFTHLNQ 328
E L+ LR L + NL+ + FL ++ +L L GN L T P T LN
Sbjct: 856 ELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVT-LNA 914
Query: 329 XXXXXXXXXXFLNCDCR-LRWIIEWIRNGELQVTSRERNPQFCGSPSNFRERGFYSFEPN 387
+C C+ L+ + W+ + +V + + +C + R N
Sbjct: 915 RLVELSLGSNPWSCRCKFLQELSSWVSDNAHKVV--DASDVWCYYGGDARPAYRRRLNVN 972
Query: 388 ELVC-DY 393
E VC DY
Sbjct: 973 ETVCSDY 979
Score = 27.9 bits (59), Expect = 0.36
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 132 SLSLLDISKNRITYIENHSFITLRKLTTLKVSDNNV-TLATHAFTGLEASLKNLNLKGTK 190
++ +L ++ + I I+N +F L L L + DN + L F L + L+ L L+
Sbjct: 819 NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERL-SHLRELYLQNNL 877
Query: 191 QKLVPN-CIRGLRSLAFLDLSQNSIRELP 218
+ N LRSL L LS N + P
Sbjct: 878 IGFIGNLTFLPLRSLEILRLSGNRLVTFP 906
Score = 23.8 bits (49), Expect = 5.9
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 30 YNLARDLSVQCDQVDFSALMSALNLSVKNTAIDLLYVNNSSIPSLTDNMFVN 81
Y RD V+ + + LSV ++ ++LL++NN+ I + N F +
Sbjct: 589 YYKIRDSKVKTLDASHNRITELSPLSVPDS-VELLFINNNYINLVRPNTFTD 639
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 3 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 62
Query: 544 V 544
+
Sbjct: 63 I 63
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 71 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 130
Query: 544 V 544
+
Sbjct: 131 I 131
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 490 RHPSNQNPPLVMNFS---QQKTKVDDSNEVIVKNAYRQDNSV--IIQW-DSDVANILGFR 543
R +N++ PL + F QQ VD+ N+++ NA+ + V +QW +S+ + R
Sbjct: 71 RPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLR 130
Query: 544 V 544
+
Sbjct: 131 I 131
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 24.2 bits (50), Expect = 4.5
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 LSVKNTAIDLLYVNNSSIPSLTDNM-FVNLKIHNLQIS 90
L+ K+ +D+ ++S+PSL N+ ++K L IS
Sbjct: 401 LAGKSEYVDITVTTDASVPSLVSNVRITSVKSSELSIS 438
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,972
Number of Sequences: 429
Number of extensions: 7586
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 20
length of query: 842
length of database: 140,377
effective HSP length: 64
effective length of query: 778
effective length of database: 112,921
effective search space: 87852538
effective search space used: 87852538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)
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